MmuINT0004377 @ mm9
Intron Retention
Gene
ENSMUSG00000087279 | 4930544D05Rik
Description
RIKEN cDNA 4930544D05 gene [Source:MGI Symbol;Acc:MGI:2148639]
Coordinates
chr11:70429900-70430392:+
Coord C1 exon
chr11:70429900-70430107
Coord A exon
chr11:70430108-70430259
Coord C2 exon
chr11:70430260-70430392
Length
152 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
CTATACTGTCCTCTTAACAGAGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
ATCTCGGCCCTGTGGCTGCAGCAGGAGGTGCAGCGACTGGACGGCGGCAACGACTGCCCAGGCCCAGCCCCAGACACTGGGGATCCTGGTAGGGCGCTGGCCCGTGTAGCCCTGGCCGCAGGGCAGGGGATTCGGCAAGCTGGAACGGCAGCTGGCGCAAGTGCCCGGTACCTGATCCAGGGGGCGTGGTTGTACCTGTGTGGACGAG
Seq A exon
GTTTGCACGGGTCTACCTCATCTCTGCCACAAACCCTATGCCAACTGGGCCTTGGGGTCCCTGGGGATCCGGTGCGTTTGGGATAAAGGGTGCGACATGGGTCAGAGGAGGTATGATTAAGGAGATGCTGAACTATACTGTCCTCTTAACAG
Seq C2 exon
AGAGACTCGGGAAACCTCAAGGTGTCGCCCAGCAGCAGTGAGGAGAATGGGGGAACAGATAATCCATCACTGTCCCAGTCCAACCCTGTGTCCAAATAAAAGTCCAGAACGGGACAACACCAGGTCCCTATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087279-4930544D05Rik:NM_001145537:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGGGATCCTGGTAGG
R:
TGGTGTTGTCCCGTTCTGGA
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: