MmuINT0005449 @ mm10
Intron Retention
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20506728-20508185:-
Coord C1 exon
chr9:20508019-20508185
Coord A exon
chr9:20506883-20508018
Coord C2 exon
chr9:20506728-20506882
Length
1136 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTAATGATTGATGTGAACAGGAC
3' ss Score
5.35
Exon sequences
Seq C1 exon
GACTTCTAGATCTGTACAGAACAGGATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAAATAAACCAGTACCTCCAGTACCTCCAATAAATGAAATAGAAGAG
Seq A exon
GTAAGATGATTTGTAATAATGTTTTTATTTTAACCCATATATTGAAAATACCATTCTAGTACATAATAAAACATTGGGATGCTTACTTTTTTCCAGACATGTTTGATTTATGTTTATAATAAATGAGATGAGTAGTTTTTAAAGATTGAGAACCTGGGGTGTAGGTTAGTGGTAGAGTGTATGTTTAGCTTGAGGTCCTGGATACAGTTCAAGTCACACACACAGGGCAGGGAATTTAGCCCCATGGTATATATAGTTCTTGGCTCATACACAGAGCCCTGAATTCTATCCTCAGCGCCACATAAACCAGGCATCGGGGAACACATCTGTAATCCTAGTAGTTGTGAGAAGAAGGATCAGAGGTTCAAAGTCATCCTAGCCACATGGTGAGTTCAAGGCCAACCCTTGTATCACAGTATGACATTCTGTCCTTAAAATAAGAAAGAGGGAAAAGAAATAGATTAGCAAGTTCAAGCTTGTTTTCTGTTTTGTTTTTAAAGAAAGGTTGTCTTTCTGTAGTTGAGCTCTAACTCACAGTCTTCCCGCCTTGGCCTCTTCAATGCTAGTATTATCAGTGTGCACTCTCAGGCCCTGGGCCAGATGTACTTCAGAGCTGTCAGACAATAGTCATGTTGACTTTAAAAATATTTCAACTTCAGTTTTTTAAAAATTAAGTCATAATATGTACATGTCAGTAGTCATTTACATGTGGAACTTGTGACTCCTGAATAGTTCTGTGACGGGTCCCTATATTCTCGTCATGTTAGGGAGCAGTAGCAATCATAGAAAATCAAGCTTTTTGGACAAACTGAGCTTCATCAGTTCTCAGTTCATTTCCAAACTGGGTAATTAATACTAGACGGATTACTAATGCTGCCTGAATGTGGGTGTTTCAGTGTGGGTAACTCTATCTTCTGGTTAGGATGCTTATGATAGCAGGTGAGCGTATATATGTAAAGGTCCTAGCACAACTTCTGACAAAAGTAGTAAAGGTTAATTGGTATGCGTATGGCTACTGTTAGTGAGTAGACGTTTGTTGGTGGGTTTCACATATATTATCTGCAGAGAGTGAGCACTACTGTGTGATGTTTGATGACTGATGTTCGATGTTGTTGATTAATGATTGATGTGAACAG
Seq C2 exon
GACTCCATATAACCCTGTATTAAGAGGAATGGAGATTGCCTCTGTCCACTTAGATTCATAAGCTGTCCCGAAGTGATCTTGGCATCAGGGAAGGGAGTGTTCAGGCACATTTCACCATCAGCATCACGGGATGGCAGCCATTGATTTGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510:ENSMUST00000174462:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACAGGATATTTTCTGTGTCCT
R:
GGGACAAATCAATGGCTGCCA
Band lengths:
304-1440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types