MmuINT0005538 @ mm9
Intron Retention
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:129100083-129106562:-
Coord C1 exon
chr5:129106412-129106562
Coord A exon
chr5:129101640-129106411
Coord C2 exon
chr5:129100083-129101639
Length
4772 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GGTTATTGTTAACTCTCTAGGCC
3' ss Score
6.08
Exon sequences
Seq C1 exon
AGCCCCAGCTTGGGGCTGGACCCCAGCCTCCAGCCTCACCTCCTGCCGGCCTCTCTGCTTGCCCTCCCCGCCCCAGAGGGGGGGTGGGAGGCCTTGAGATTGTCCCCGGTACCCCAAGGACGCCGAGGTTACGGGAAGTTTGGGGACTCGG
Seq A exon
GTAAGGGTGGTCCTCACCCGGGGTTGGGGGCTGGGGACGCATCTTCTACTTTTACGACCGGGCCCTGGCGGAGGGCACTTTCAAAGAGACACGGGATTTGCGTTTTATGACCGTGCTCATAAAAAAGTGGCCCCTCGGCTTGTAAAGCTGCCCGCATCTTCCCGAAGCCGGGGGTTTGCTGCCCGGGGCGCGGAGCTCGGACTCCGGGGAGGGGCTGCCTTTGAAATTTCAAAAGGGCCGAGTGCAGGGGAGGGGGAGGGGACTTGGGAAGCCGGAGTTTAGGGCCTCTTCTGCAAGGTCTACTCAAAGAAAGAAGGGAGGGGGCGGGGAGGAGACTTTCCGGGCCGCTGACACCCCGCACCCCGAGAAGAGGGGCTTGGCTTGAATCGTGGTGACCCTTGCCCCGCCAAGGCCACCGTGTTGGGGACCATCGCGCCAAGCCGGCTGGTGGTTTCTCCAAGCGGCTGAGTTTATTTATTATAGGAAGTTGTGTATTTATATTATTTGGCGAAAGATGTGCTCGGCCTGCGTCCTCCTGGGAGGCGGAGGCTGAGCCCCGGCCTACACGCGCACGGCTGGTTCCCACGCAGAGTGGTGGGGCCTCTCCGTGCCTTGCTATGCTGGCTCCTGCCCCTTGGTTGGTTTTGGGCTAATCTGTGATAAGGACACAGAGCTTCAACCTCCTTCCCCCGCACAGGGAGTGAGTGCACCATGGGAGCCCACCGCAGTCCTTAGATGTCCGAGAGATCTGGGGTGCGGCACCTGTCGCGGACTCTTGGCTTTGGATAAACAGCCCTCAGGGCGGTGGCCCACTCTCTCCTTAGACCCCACCCCACCCCCATTCAGGTCTGCGTTTTAAGTGTCTGGGAAACTACCAGGACCTCCAGTGCGGACTCCCCCAACTGCATAGGTGCAGCTAAGTCCCCTGCTCATCTTTCGGCCAGTCAGTCTTGCGCACCCCAGGGCCGAGTTGGGTGCACAGATGCCTGGAAGCCTTCAGTGGCTCCAGCCAAGCCAGGAACGAGGCTACCCAGGACCCCTCCTCCCCGCCCTGCCTTGCGCTTCCTGCAGAGGATCGACTTCTAATTAAAACAAGGCTTCAGCGTCCCATCTGCAGGGAGTTCTTCCTCTTTACCCCCCTTTCATTTGTCAGACATAGCGGACAGACCTGAGGCTGGGACACTCCCAGGACCTGCTGAGTCCTGGGGGTGGGGGGCGGAGGGGTGTGCACAGGCTCATGCCTCACCTTTAGATCCCCTGGTCCCCTCTGCCTTTCACGGGAGGAAGTTGGATCCGTGGAAACAGCGGTCCGGAAGACTGAGGTTAACACAGTCAGAATCACCACCCACCACCGTGTTAGTGACCCAAGAAAAACCTGCGGTGTGGTGAACGCTTGCGGCTTGGATAAGGATGGTTTACTTAGATATTTATAGTTTAGTACGCTGTTTCCAAAACCTTTTAAGTCAGGTAAGATTCTTGGGCTATCGCTTAGCTTTAAGACAGACTAGTTTGCAAGGGGTCCTTCCTGACACTTTTGCCTTCCGTTTTCTCTCTCTCTCTCTTCTAATTCCACACTCCCCCCCCCGCCCCTTGGGGCGTGGGGGGCGTGGAAGTAGCCTGGGTGAGCTCAGCTCCGGAGCAGGGTGTGAGCTATTTGAGACTGCCCCACGTAATTGGTCTTTTATGCTCTGGTTACTTCTACAGTGTTCCGACCTTTTATTTTAGCTATGATCACTTCACGTTCCTTTCTTCTCTCCCCCAACCCCCGGGACTCCCTTAAAATATATTAAGAGAAGAAAAAGCTAACAGAATTTCTTCCATCTGCCCAACCTAGTATAGAAAAAGAAAGGAAAGCAACAAATAGACATTAGTATCTAAAAATAAGGGCCCCGAGATAGCGAGAGTGGAAGGCAACGCTAATAAATGAAAGGACCCCTTTGATGGCTCCAGCTGAAAAGATATTTTATTTTTCTCTCTCCTGTGTGTGGGATTTGAGACGAGTGACTCCAGAGCAGCCGGGTCCCCTGCTGCTCAGCCCTGGCTCGGAAACCGGCCCCCCTCTGGCAAGCGTTATGGAGAGCTGGGAGGAATTTTATGGCTGTCTCTCTCCCCTCGGCTCTTTTTTTTCTTTTGTCTTCTTTGAAGAACGACTTTAGACATTTTATTTACATATTTAACCAGGGATAAAAGAGGGAAGAGAAAGCTTTGGGGTGGGGTGGGGGGGACTGGCCTGGGAATAGAGCTATGTTTAAATTAATGGAAATCTTATTAGGTTTCTCAAAATTTGAGCAAGGGTTTCTAATGAAACTTGATAATTAAACATGATTTTAAATAGCATCCTAGAGCAAAGGGTACTTTGGACCCCAAATCTCCTAATATATCTATCTACGTGAGATTTCAAAATACTGTCTGTAGATATTAGCGTAGAGTTCTTGCAAATGTCTACCAAGGAGAGTGCAAGGTATTCTGGAAGGAATACTCTTTAAGAGTCAGATGGTGTCTTGAGTTAAATAATTTTGGAGGTGGTGGGGAGTTGAAAGGAAGGCCCTGTTTAATTGGTAAAGTCAGAAGTTAAAAAAAAAAAGAAAAGATTCTCTGCCATGGGTCTCAGTGGTAATCAAAGCTGCATCCTTCCTCAGTATGGGTGAAGGAACCATAAAGTCTTGAGAGGGGTTTCTGAAATAGGATTAGAGAGAACCCAAATAATCTCTTTAAGATAAAAAAAAAAGTACTTCGTCTCCTACAATAAAGAAAAATTAAGCCAGAAGCTTAGCCTGTTACAAGCTAATTGCAAGAGTAAACATGTGGGGTATGGGCAGAGATTATAGAAAGACATGAACATCCTGTCTCCCAGCCTGAAGATGAACCAGGGAGCTGGCTCCTTAACGTTTGTCTTGGTAGCTTCAAGGCCATTTCTAGAACTTTCCTATTTGCGGATCCAGTTGGAAAGCTCTTAAGATCTCTGTTTGCATTTTCCAAACTGTTCCTTACAGTAAGGAAAGTGGTCTGCTTACTGGTAATGGTCTCTTTAAAAGGCACACATTGAGAATTCAGTTTTCCAACCCACTAGGCTTGGTTCCACGACTGCCTCACAATCCCCCCCCCCCTTTCGGAGGAGATATATTAAAGTCATCCAAAGTGATGTTTAGTTAACACACACAAACATATGCTCCAAGCATAAAACACACACACCTCATACCACAAAGCAGTGTAGGTTGCCCCAAACTTAAGAACAAGTTTTAATTACACTTCAGCACATGTAAGATACGGGGTGGTTGGGGGTGGTGAGGCGCAGAGAGAAAAGGCCCTTGGCCCTCTGCGTTATAAAATGCATGAAGGAGTGTCCGGGCCGCGGCAGAACAATTTAGGCCGCTATTTTAAGGCCACTTCCCTTGAAATGTGGATTGAAATATTACCAGAGGTTCGCGGGGCGCTTTCGTGTGAATTGCAAATCAAGCATCGCTTTAATCCTCTTTCAAGGCCGGGCCTTGGATCGCTGGCGTCGCGCGGCTCCCCACTGCTTCTGGCGCAGAAGGGACCATTCAAGGGGGCAGCTCCCCTCCTCTGTTCCCACACTCCAAAAAACAACACCGCAGACAGACACCCTCCAACTAAATTAGATTAAACTCCTACTCTTCCACAGCGCATTAGCCTTTTTACAGCCCAGGCTTCTGCTGATCGCTCCTCCCTGTTTAAAGACACAGCACAGCTTTTTCCGTCTCTGCTACCTCCACACAAATGTGTCGGGGTGGGGATGGGGAGGGCAGTGGGGAATAATCTTTAAAAAGGTGTAAAGTGCACCAGGCTAAGTGACTTCGGATTGCTGGAGATACCTCTGTTTAAAACACGGGCAGACCCACGTGTGCCCCCTCCAGGGCTTTCAGGAACCCCCCATGTGAGCAGCATTTAAACCCTAGTATATAGAGTTTAATTTAAAAAAATAAAATAAACGAATAAATAAATAAATAAACAAACAAGTAAATAAAATTTACAGAATTACCTCACAAAATGAAGCAGGCAAACGTGATTCTGTTTTGCATTAGTGTCCCAGAGGACACCGGAAGACAGTTTGCTGAAATTAACAGCCACTTCTACAGTTATTCCATGGGCTCATGCGACTGAGGCCTCTGCCCCTCAGCTGCTAGGCCAGTGCCTTTCTTTGTCCACCACCCCAGCTACCGCTGCTTCTTTCAGCTTTATTCATTTCTTCAGTACCTGGGTTTTCCTAGTCTGGAAACTGGTCCGTCATCCTCCCTGACACAGTAAACGGGGGAGGGGGGGGGGGAACTTGGACACAAAGCTGGGGCAACCTTAAGCTCTACCTACCATCACTGGGTCTGAAAATCCCTCTACCACTTTCTAGAGCATTGGTTCTCAACTTGTGGATTGAGACCCCCCCCCCCCTTAAGGCCCAAGGGTCCTTTCCTAGAGGTTGAGTATCAGCTATCCCACATAGAAGATATTGATGTTACAATTCATAACAGTAACAAAATTACAGTTATGAAGTAGCAACAAAATAATTTTATGGGGCGAAGGTCACCACAGCATGTATTTACAGGGTTGCAGCATTAGCAAGGTTGAGAACCGCTGGTCTAGAGCCACCTGACTAGGGCTGAGCTATTCCGGATTCTGGGCTTTGGTTTTCTTACCTGAAAAATAAGATCCAATCTAGTAAGGCCAGGCACAAGGCTGTTTCCAAGATGACAGTTTGTGAAGCACAGTAAATATAACCCGGGCATCATCCTGGTTGATGGTTATTGTTAACTCTCTAG
Seq C2 exon
GCCCCAGGACCATGTAGGAGACGCTCCTCAGGCCGCTGCTGTTGTGCGGGAGTTTTCACATTAGGTTAATTGAAGTTGGAAGACTCACCCTAGCTGTGAGCAGCACCATCCATAGGACTGAAGAAAAAAGGAGAAAGTGAGCCAAACACCAGCATTCATCTCTCTCTCTGCTCCCTGCCCTGAAGCAAGATGCAACGTGAGCAGCTACCTCACAAACGGGTTACTGTGGCTCCCCACCATGAAGGGCTGTGCCCTTCAACCGTGAGCCGAAATAAGCCCTTACATAGTTGCTTCTTGTTGGTTAGTCTGTCACAGCAAACTAATAGTAAGACAGAATCCCAGAAATCCATCATTTAAAAGCCAACGTGAGTCACTTGGACAGCGAGCCTTTGGTACATCCGGCTACTTACTGAGCTCCTGGGACAAACTAAGATACTTGATTGTACAGGAACTGCTGAAGCAAGATGAGGAAGGAGCCTCTTCATTTCACAGATGGGAAACTGAGTCCCGAGAGTCACGTTATAGCTGTGATCTGAGAAGCCCCATCTGGTTCAGGGGTCCTGGGTGACATCTGCCTCGGAACAGCATGCACCCAGGAAATGTCAGCAGCCAGCTGGGGTTTCCAGGAACAGACCCTGTGGAGCTGTCATCGTTCCTCCTGGACGGAGAAGCATCTGTGTTCTACAGTCTCTTAAGAGGGCTGTTCAAAGTCAGAGATTGAAGGGGAGAGATGTTTATTTATGACCTCAGCTGTGGCATCTTAGGCTGGTTACTTAACCTCTCTGATCTGATTTCTGTTCCCTCTGCATTAAAATGAAGGTAATAACGTCAATTTTATTTATTTATTTTTTAAGACTTGGGATGGAGTGAATATCAGACAGCTACAAGGAAGGATTTAGAAGCAGGCCACTTGGCCACTTGGGATTTACTAGCCAGCAGACTCCCTGGCTAGTTGAGTGTGTGAGTGTTTGCCTGTAACTGTACCTGTACACATGCCTACTTGGTGGCCTAGGAGGCCAGAAGAAGGTGGTCAGATCTCCTGGAACTGGAGTTATAGGCGGTTGTGGGCCACCATCTGGGTCCTGGGATACTGAACCTGTGTCCTCTGCAAGAGCAGCAAGTGTTCTTAACGACTGAGCCATTTCTTCGGCCCTCTTTCTTCAATTCTCCATTGTCCTGCTAGAAGGCAGAATGACTTCGTCGACAACCTCATGCAGGAGTGGAACCAATCTCCTTCCCCGTGGGTGGCTGGGCATGTAGCTTCCTCTTTCTGTCTTGAGTGTTGCCAAGGAAAAGGGGCTGCAGATCTCCCCTGGATTGCAGAGTGGGAGACAAAGCAAGGGCCCCAGAAGAGCTCTCTGGATGCTCCTGGCTACTGAATCAACCGCAGAGCGCCCTCTGGGGCTGGGGTCTGACACTGTTACCCCTCCTGGCCTTATGGACGCAGATCCAGCTCAGCCTCACAATGAATTCAATGGTTCCTGAAAGCTTGTGCTCGGCCTGCCCACCTTCATCCACAGGGCAACATGGGAGCCAGACTTCTCTCTGTGGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591-5930412G12Rik:NR_015517:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: