MmuINT0005650 @ mm10
Intron Retention
Gene
ENSMUSG00000033972 | Zfp944
Description
zinc finger protein 944 [Source:MGI Symbol;Acc:MGI:2442394]
Coordinates
chr17:22340967-22343693:-
Coord C1 exon
chr17:22343640-22343693
Coord A exon
chr17:22341094-22343639
Coord C2 exon
chr17:22340967-22341093
Length
2546 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CAGGTATTTTTCCATTACAGGGT
3' ss Score
7.74
Exon sequences
Seq C1 exon
ACTTGGAGAAGAACAATAAGAAGAATGGATGTTTCCCTGGTAAATGCTCCCCAG
Seq A exon
GTCAGTGTCCTGTCCATATTTTTTTTTTGAAAACTCCTCTCATTATTTAAACCATTCGCAACTTGTAATGTTATCTATAGTGTTTGTTTTTTCTCATTTATCTTTGTTCTCCCCCAATAATAAAAATTATATCTTTAGTTCTTTTTCACTTATAATGGGACAAGTACAGATATGTCCAATTATATTTTTACTGGATTTTATGCTGTGTGGACATAAATGTTCAAGGATCAATGGCCTGCGGTTCTGAAAGAGAATGTATTGTAATTGATGCTCAAAGAATATATTGATGGTTAATTTCTTCATTGGATGGACTTGTGTCATTTATTATTTCTGGGGACAGATCTCCTGTGCCACTTAAACTGCATTTCAGGAATAGTCAGGTTTCCAGAAACAACCTTCAACAGCAATGTGAATGTAGATCTGCAAATACATGGACATTGATGTTACTGAGAAATGTATGGAAGAATAGAATTTATGGAATTGTCGAATTAGAAGACTATTCACTGTCTTGAATGAAACTTGATAGAAAACATTTCGGCTCCCTAGAGACATAGATGATGAACGGAATATGTGTCTTTCTCTTACCGTAGGATTGATGTGTTTGTGAGGAGATGCAGGTTGTAGTATTCTGGTATCTCTTTTGAACATTTTATGTCACATAGTCATCTTGGGTTTGTTGACACTTGAAATCTTTGTCTCAGGAGAGACACTGCCTAGTGCTCAGTGTGCTCAGTTCTCAATATACAGATGATTGTTTTCTTCTTCCCTTTTGTTTCATTTTTTAGGAGTAATATAAGCACTACTGTGTGTGCCTTTATATTACAGCACATGCCATATATTAGTAAGAATTTTCTGGAAAATATTATCTTGGTACTATGCATAAGCCATCACATTTTAAGCATACATGAATGTCCCTCTTAATTTGTTCTCTTCTTCAGCAAAATGAATGTTCCATCCACCCTATGTTTTTCTCTCCTCCAGTCTATGTATTACATAGGGGAAAACTGAAGGACTGTGGCAATATTTCTTTACAATAATATTTTATTTGAATACCTAAGTGTTTATCTTCATATTTTTATGTACATTGAATGATACCATATGCCCCCAAATCCTGAGTTTAGCATCCAGCCCTTGGGACTGAGGTTAAACATGATAGTGAGCTACAATGTGTGTAGAAACAAAAGAAGATTAAGTCAGGGCTACACAGAGAAACTCTGTCTCGAAAAGGGAAAAAAAAAGAGAGTGAGAGAGAAGATAAAGTTAAAATTACAATTTTCAGTTAAGTCAATCTCATGAGTAATAATGTTTTTAAAATTCAAGAAGAATTACTATAATTCTCAATTAAAAAACTCAATTTGATCAAAAAATGATTCTACTTTAGTTGAATGCATTGTCACATGTGCCATTTATTTACACACACATACCTAATTATTATGTAGTAAAAAAACATATGTAATTAATGACCTTGATATTATCTGTACTGCATATGTCAACTTTGATAAAACTTTCAATAATTCTATGCTGTCTAATACTGGCTTTTTTATTTTACTGTTATGAATATAGCCTCATAAAATAACTTCATAAAGTATTTCATTCTGTGTATCCTTTGGAATGTTGACTGGGTTCACTGATTTAATGTTTAAAGAAAAAAATGTGATTCTTAATTCATCCAATAATTCTGCATTTCGTGTTGTACATCTTTGTCCTAGTAAGGGTACAGCATTGTTCCTAGGTCTCAGGATATCAACTGAGAATTTTAAAATAGAGTCATGTGAGCCCCTACTACAGATAGGATTGATAAAGTGTCCATAGTTGAGCAAGAGTGAGAGCTGTAAAATTTAGAAGTACAGTTTTATTCATTGGAATTTGACCATCTGTGATGTGACACTGGGATTCTGTTTCATAGCAACCCATACTTCATAAAGCTACACTCCTGAATCTAGACAAGAAATGTGTATGTTATATTCCCTAAAACTTTGCTGATTACAATCCTGTAATCCTGTTTCAGAGAAATAGAAAATACAATAGAGACTATTTTGCATCATTTATTAAAATTAATTTTCAATTTTATTTAATGTTTGTTGGTATATTTGGCCGAATGTGTGCATATGTGCTGTGTATTCCTTCAGCCTGTAGGGCTCAGAAGAGTGCATCGTATTTCAGAGAATTGGGATTAGAAATCTGTTGTATAGTTATGTGCACTGGGAAACAACTTTGGATTATAGAACCCAAAGTACAGACAGATTTTTAAATGAAGTGATGGTGGCAAAACCTTCATCTGATGCTAACGTCTTATAAAACATTAGAAAGTTAATGAAGCAGAAGACCTTATGAATGTAATCAATATAGTATATCTTTCTATAAATTGCCTATGAAGGAGCAGCAGTGCATACCTTATGACACATTTTTACAGCATTTCTAGAAGATGTTGTTTGTCCTTAAATATTTACCATGACTCAACTTTATCACAAATTATCTTGAATTCTTTAGGAGGTTTTACCTAGGAAATCACTTTTGTCCAGGAAACAGGTATTTTTCCATTACAG
Seq C2 exon
GGTCAGTTAACATTCAAGGACGTGGCTGTGGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTTATGTTGGAGAATTACAACAATCTGTTTTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033972:ENSMUST00000115535:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types