MmuINT0009146 @ mm10
Intron Retention
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26848251-26848990:-
Coord C1 exon
chr2:26848921-26848990
Coord A exon
chr2:26848308-26848920
Coord C2 exon
chr2:26848251-26848307
Length
613 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGTGTACATCCTTCCTACAGCTA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GAAGACCGAAATGCAACTTCCTTCACCTTGGAATCCTTCCCTTCGCAGTGTTTGTCTTAGTCTTCTTTGG
Seq A exon
GTAAGAACCCAGGCTGATGAGGAACGACTGGAGCCTGAGCTGTGTGCATCCTTACTAGCACAGCAGTAATGAGGGTGCTCTTGCCTCAGCACCCACAGAGGCATGAACAGCTTTTGCTTGTTCACATAGTGAAGTCTCTGATTCCACAAAAGGGGGCTGGGGCTGGATACCCAGTCATTTGGCTCTAACTGTGAGGGTGGGCCTGGGAAAGGAGAGGAGGGCAGGATTGGGGGTGGTGGATTTCAGTCCTCTCTCAATGCAAATGGTCTGTGAGCCCCCAGAGAGCAAGACACTGCCATGCCTACCAGAGCTTCTGTAGACACAGCCAGGAAATACTCTTTGATACAGTCTTGGGTTGTAGGTAGCTGGCATGGAGTAGGGGCTGTCTGCAATGTCTACAGTTGTCTCCATGCAGACCTTGTTCCCAGGGCACTTCCTCTTTGCCATCTTTTCCAGTGGGGTGAACATCCTTAGTTCTGTTACCTGAGCCTGCAGCTCCACTGGGATCTGAGCTCACTGTGCTGGATTCAGTGGTGCACTTGGAGGGAGGGACAGATAGCTGATGTCAGGTCTGTGTCCTGAACAGCTACCCCTGTGTACATCCTTCCTACAG
Seq C2 exon
CTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787:ENSMUST00000102900:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF034148=Glyco_transf_6=PU(4.3=65.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types