MmuINT0010261 @ mm9
Intron Retention
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126909887-126910552:+
Coord C1 exon
chr7:126909887-126910088
Coord A exon
chr7:126910089-126910404
Coord C2 exon
chr7:126910405-126910552
Length
316 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GAGGTTCATCTTCTTTGCAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GCAATGGACTTGGCCAACATCCTAAAGACCAGTGAATCTCTCACTTGAACACAGAAACTTGTGTGGAGAATATTGTTAAAGATTTAATCCATTAACTCAACTGATCTTCAGTGGGACCTAAAGATTATGCACTTCTGACAGGTGTCCAAGTGGTGCAGTGGTTCATAGACCATAGGCTCTGGATGAGTGGATCTCCACTTGG
Seq A exon
GTGAGTGGATCTCCACTTGGGTGAGTGGATCTCCACTTGGGTTATGCATTACGACTCTGAGTAAAATGTTAAAAATAGCATAGACCCACTACCCAAAGTGCTAACTTCATTGGTCAATTATTCAGGCATTAAAGTTTTTATAAAAATCTTTCCTGGTGATGCAATGCATAAATGGGATATCAAGTCACTGCTCTGCTGGAATCCTGTTGTCACAAAGTAAAACCATTCAAATGAGAGTCCAAAGACCCAAATTCAAACCTGATATAATGGGGTAAAGCCTGTGGCTTACTTTGCTTGAGGTTCATCTTCTTTGCAG
Seq C2 exon
GTGAAAGACAAGGAGGTTCAAGCTGGATGATCTCAGAGAGTTCAAGATCACCGACTCGTGAGGTTCTCACACAGGAAGTGGACACCTGGAGCCGCTGGATTTCAAATGCATCCATTTCATCAGCATGATGCCTAGCCACCAGATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-Acsm3:NM_016870:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGACTTGGCCAACATC
R:
ATGGATCTGGTGGCTAGGCAT
Band lengths:
350-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: