MmuINT0010441 @ mm9
Intron Retention
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12396581-12398628:-
Coord C1 exon
chr13:12398541-12398628
Coord A exon
chr13:12396660-12398540
Coord C2 exon
chr13:12396581-12396659
Length
1881 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTTCTTTCTGTTGCGAAGCTG
3' ss Score
5.01
Exon sequences
Seq C1 exon
AAACATCTGCCAAAGAAGGGCTGCTGCTATGGTGTCAGAGGAAGACAGCTCCATACAGAAATGTGAATATCCAGAACTTCCACACCAG
Seq A exon
GTAAGCACTTGGGCTTTCAGGCCCTGCCTGTTCCCCCAGAGCCTGTGAAGGCCAGGAGAACCATGTGGCTTATACCAGTATCTCTACTGTCGAGGGCCTGGTTTACACGGAAGAAGTGAAGCTATACTTTCCCAGTGACCAGGGCCTCCCACAGGAGACAATCCGTTAGGGTTCACAGTCCTGTTTGTAAGTGAAAGTTGTGTTGTGCCAGAGCCCTTCCCATCTGGTAGCTCCTTTGTCCCCACACAAGGAACGGATGACAGGAACGGTAGCCTCTTATCTGGGACGGTGGGACCTCAGCAGAATCTACAGCTACTCTGGACACTCCAGCACCCTGGCCCCTTCCTTCTTAGGCCATCAGCTTTAATTGCTAAAATTGAAGACTAATAGGAAAGTCACATTAGTGGCCGAGAACAGGACAAACGTAGCCCAGGGTTGTGTGAGAGCAGATCGTGGCTCTGGCAGCAGGCAGCTCCTAGGGGGTTGCTAGCACTGTCCTATGTGAGCAGAGGCTTGGTCACGTGTCATCCTTTGGATGATGAGTTCCTGCGGGTCTGTGGCAAGCAAGAAGAAGGAAGGACAAAGTCATGCCCAGCCACAGATCAGGAGATACTTCTGGTTAGAGCTTTAGGTAGGTTAATGGCTGTCGGAGAGGCAGAGTCCATTTTCTTTAAGGGTGTGACCCTCGGTATGTTAACCATACTCTGGTAGATGGCCCTAAACCCGTGAGTATATGGACAACACAAATTGGACTTGACTATTCAGAGAGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATGATTGGGAGTATGAATAAATTTACTATATGCTTATATGAAACTCTCAAAGAAATATTTTTTAAAATTATATAAAAATATGTTAGAATAGCCCCAGAATGATAGCACCAAGCTAGGCCTTGCAAGCAGAGGAGAGAGTGAGTACACCCTGTCTCCAGAAGCCAGGGAGGGCCGAGCCAGCCAGCCAGGGTGAAAGCCAAGTTCCCGTGTTTGCCAGCACTGGCCTCTACCCTCTTTGGTGGACCCATGACTTTTTGAGTGACATTTCCATTTCCCTCGGGGTCATCTTCCATGTCTGACTTCTTGGGGGACACTTCCCATTCCCCACTCATGGGCCCTGCTGTCAGCTGCACACTCAGAGCTGAGCATCCAAGGGCGCAGTAGTAGTGTTGTCTGTGCCCCAGCTGACATCCAAGTCTGCCCCGTGACCCTGGCCTTCTAAAAAATAAAAAGTAAAAATAATCTCAGAATGGTGCCCCCAACCTGCAGCCCCATCATTTAAGAGTCTGAAGCTTGAGGGTTGAGAGGCCAGCCTGAGCCATGCTGAAGGACCCTGTCCCAAAATAATAAACAAACAAATAAACAAACGCAACCCCCCAGAGTAGCTGGTGAGTCATGGTGGCTATAAGAACTCTAAGAACTCTCCGAGAGAGCATCCCCTAGATTCACCTGGGGCCAGTATCCTTAGGGGAAAGGGTTACATACAGGTCAGTATCAGCTGAGGACCAGAATGGAGACTGGGTAAAGAGTGAGTAGGAAACCCTAGGACTACAAGTGTAGGAACGATGATAGACTTGTCCTCTTTCCCATTGCTGTATATTCTAGCACATAGTGAACAGGGTTAGGGCCCCTGCCAAGGCTGAGTCACCTGCTCAAAACTGAAAGGAAGAGGGGAAGGGACTGGAAGTGTGTATGGGAAAGTGCAAGGCTGGACCATCCAAGGGCCACTGGTGTTATTCACTGGGGTAGGGCAAGGTCCCTTTGGTGCAAAACTTCAGATGGGAACAGACAGTGTCTCACCTAGGGGAACCTGGGGTCTCTCCATTAACCCACATTCTTCTTTCTGTTGCGAAG
Seq C2 exon
CTGGAAAGATGGCCTTGGACTCTGTGCCCTCATCCACAGACACCGGCCCGACCTCATTGACTACTCAAAGCTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-Actn2:NM_033268:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: