MmuINT0011567 @ mm9
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95484368-95484845:-
Coord C1 exon
chr3:95484660-95484845
Coord A exon
chr3:95484498-95484659
Coord C2 exon
chr3:95484368-95484497
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TGCCCTCTTATTCCCTTCAGGTG
3' ss Score
12
Exon sequences
Seq C1 exon
AGATGCTGAGGGGGGAGCCCCTACTCCCCTCAGCCCCCCGCCCAGTCCGGGCACCAGGCACCCTCCAACGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACTCGTGTCAGGACAGCCATGGGGTCTTCTGCTGGATACTGGAAACAAGTGGGGCACTCTGAGTGTTCAGCATCCTGTGGCAAAG
Seq A exon
GTGAAGGAGGACACCTCAGCCCAAATCCCTGTTCTCTATATATATCTATACAGATTCTGTATCCTGGACCACGGGTCTACATTGGACCCTATGTCTGGGATTTCATTGAAACGGGGCTCTGAGCCTTCCTGCCTCCCCTGGCTGCCCTCTTATTCCCTTCAG
Seq C2 exon
GTGTTTGGCACCCCATTTTCCTCTGCATTTCCCGTGAGTCAGGAGAGGAGTTGGATGAACAGAGCTGTGCTGTGGGGGCCAGACCCCCAGCTTCCCCTGAACCCTGCCATGGACCCCCGTGTCCTCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-Adamtsl4:NM_144899:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCTACTCCCCTCAG
R:
CCACAGCACAGCTCTGTTCAT
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: