MmuINT0012626 @ mm10
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34598380-34598794:+
Coord C1 exon
chr17:34598380-34598572
Coord A exon
chr17:34598573-34598729
Coord C2 exon
chr17:34598730-34598794
Length
157 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
3' ss Seq
TGACTGAATTTTCCCTCCAGAGA
3' ss Score
8.81
Exon sequences
Seq C1 exon
AACACAGGAAGAACTGAAGCTTGGAAGGTCCTCTCTCCCCAGGGAGGCCCCTGGGACAGCGTGGCTCGAATCCTCCCCAATGGTTCCCTCCTCCTTCCAGCCACTGGAATTGTCGATGAGGGGACTTTCCGGTGTCGGGCAACTAACAGGCGAGGGAAGGAGGTCAAGTCCAACTACCGAGTCCGAGTCTACC
Seq A exon
GTAAGGGTCCCAGGCTAAGTCACTTTGCATTTATCAAAAAGCCTTCATGTACCCCCAACCCTTAACCCTGGTGTGTCTGGTCCTCTGATCCCCACTGCCCTTCCTCCTGTGCCCGAGTGTGAGGACCTCCTGGCTTATGACTGAATTTTCCCTCCAG
Seq C2 exon
AGATTCCTGGGAAGCCAGAAATTGTGGATCCTGCCTCTGAACTCACAGCCAGTGTCCCTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452:ENSMUST00000015596:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.352
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(63.9=95.4)
A:
NA
C2:
PF082057=C2-set_2=PU(16.8=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAGGAAGAACTGAAGCTTGG
R:
GCTGTGAGTTCAGAGGCAGGA
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types