MmuINT0017262 @ mm9
Intron Retention
Gene
ENSMUSG00000055547 | Apobec4
Description
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) [Source:MGI Symbol;Acc:MGI:1918531]
Coordinates
chr1:154597681-154604674:+
Coord C1 exon
chr1:154597681-154597894
Coord A exon
chr1:154597895-154603322
Coord C2 exon
chr1:154603323-154604674
Length
5428 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
GATTTCTCTTCCTTGTTTAGATT
3' ss Score
9.91
Exon sequences
Seq C1 exon
GAGGCAGCCACACCTCAGCAAGAACTAACCTGGACCAGAAAAAATTAAAAGAACTAATAGAAACAGAAAAGGATTCCTGCTGTGGTATCCGAGACGAGTCTTGATGGCACAGGTGCCCTCTGAATCTACGTGAAGCAAGGCATGGGACTTTAAGAAGACAAAGAACCAGTGCCTCTAACACCTGCAGTGTGAGCCAAGCCTGGAGACAAAGATG
Seq A exon
GTAATTATAAACCGCTAACAGTTGTTTTTAGCTCTGAGCAGATTGCACACGGATTGGGAAGGGCAAACTCCACTCTCCAACTACTCCAGTGCGAACTGTGCCTTAGCAGCACTCCTAGCTGAAGCAGGAGCAGTCTGTCCTCATTGTGTGTGCGTTTGTGTTAAACGGAGGAAGCGTGTCCTCCCTCGGCCAGTCCAGGGCCACTCACCACTGTCAATGAAAGAAAGTCCTTCAGCAAGTTGGGCTCCCCACATCTCTCATGCTTACTACCAACAAATCTGCTTGCTCTTCAGAGGGCAACATATATGTACCAAACACAGGCAAAAACGATGGGGGCAGGGGAGGGGGCAGTAGTAACACAAGTAGCCCGGGACACAAGCCAGAACCCACTTGACTTGTGAGCCAGTGCAGGCTGCTGAGGTAGCCCTGAGACACCTGGATAGGTGACTGACAATAGAAATAATCGACTTAAGACTAAGCAATAACAAATTCATACAATAAACCCTGAGTTCTATAAAAGCTTAAAGGGAGTGGCGCTCTCTCCCTCAGAGCATGCTGGCGAAAGGACAGCCCAGGAAGACTAGAAAAAGAGAAAGCTCCAGTAGAGAACCTCAGATAGTTGTCACAGAAAAGACATTAAGAAAAATGGGACTCCAGGGCACCCTCATTTATACCAAGGCCATTGGTCATAAAGATCACCTTTCAGACAGTAATGTGCCGTGTCTGCCTAAGGCTGAAACACAGGCAGGAGTGGGGTAGAAATAAGGATATTTTGGGGAGAGTAATCAGGAGTTTCATGTTGCTGCCTTTATTGTAAAAGACTAAGGACCTCATGATTTCCTCATGGCAGTTTCAGGTCACATATTCTTAGTTCCACACATCAGCTTAAAAAATAATAACAAAGGCAGAAAAGGCCCTCAGGGTACTTTCCCTATCTTCTGTGGAACAAAACACTGATACATAAAGGAGAAAACCTCACCTGTACCAGTTGGTCTTCCGATTGCTGGGGGGCATCACTGTTCCTTCTGTCTGTTCCAAGTGCATGTGTCGAGCGTGTGTGCCCTGTTCATACTGTGTGAGCACGTGGTGGAGTGTGTCTGCATCTGTGCGTACAGGAACGTGGAGGCCCGAGGCTGACCTCTACTGTCTTTCTCCACTGCTCTCCACCTTTGTTTTCTGAGACAGGCTCTATCACAGAACCCGGAGCCTGCCATTTTGGCTAGTCTGGCACGACATCTTGCCCAGGATTCTCTTGTCTCCCTTGAGCTCCAGGATTACAAATAGGCTGCCCTGCTTTTATGTTGGTTCTGGAGAGCCAACCCACACACACACACACACACACACACACACACACACACACACCCTGTGCCATCTCTCTGGGCCCCTGCTAGTCTTTCTGGCGCGTTTGTTACACACACAACATCATCTTACAAGCCTTCCTTTTTTTCACTTGTATTGTGGCACAGCATTTTTCTCTGGTAAACTGGGACTATAACTGGGAGTCGAGAGCTTGGTGTCGCTCAGCAGTGAGCCACACAAAAGGCACAATACTTAAGGGTACAAAATTAGGCTTAGGCGTAACAAGCTTTGATAGCAGACTGATGAGTTTGGCCGAGGAGGTTCAGGGAGGACTTACAAGCAAGATTTTCAGCAAATAGTCTTATGTTCCAAGACATTTGTCCTTTGCCAAGGGCTCGAACCAGCTTCCCAGAGCAAAGCAATTCGAAGCCTAGGAAGCCTTGGAGGGATTCAGTTACATCAGGGAATGCAATCCTAAGGAGGAAGCTGAGGCAAACACCCAATCCTTGGGTTAAAGCAACTTCAGAGATGAACAAAGACCTACAACGTAGGCCAGCTGTGACACACATCTTTAATCCCCACACTCAGGAGGCAGAGGCAGGCAGACCTCTGCAAGTTCAAAGCCAGCCTGGTGTATATGGCAGGGGCCAGGCCAGGCCAGCAAGGAACTACATAGTGAGAGCTGATTAAAAGAACAAAAACTACAGTCTAAAGCCATGTGCCAGAGCTGCCCCAGGGCTGCTAGCCACTGGATAACGGGGGCATAAACAAAGCCATAGCCCACCTTGGGCCACACTGAAGCTTTTAAACATTTGCCACCCAGGACACAGTTCCCGAAGGAAATTCACAGGTTCCATCTGATCAAACAGGGTCTGAGCTTATTTGAACTTCAAAGCCAGACTGCTGAAGAAATAGCTCAGTGGGTAAAGTGCCTGCTGGATCCCCAAAACTTATGTGTGAATTCATGGAGGTGGCTGGGCAGTGGTGGCGCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCGGAATTCAAGGCCAGCCTGGTCTACAGACTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTCTCAGAGAACCAAACAAGCAAGCAAGAAAAAAAGAAAAAGAAAGAAAAATATGCAAAGTCAATCTTTGACCTCCACAGGAGTATACACAGCTGAACACATGTACACACATAACATACAGAACAAAAATAACTACAACAAACCGAGAAGACAAAGCATCAAAATGTTTTCATACGAGTGACGATAGTAAAGCCGAGCTGGGAGGCCACTGAAGCAAATGCATTTGTAAAGTCTAAGTGAAAACTACATTTTGAAGAAATGGTCAGTTTACCTGGTTTGTATTCTCTGCCTTACCTATGTGGCTGTCTGAGCAGGGTTAGACATAAACAGCAAAGCATAAACACTAAGCTCAACCTGAGGTGCACATCTGTAATCTCCACTACTCAGGACCTCAGGGGCTGAGGCAGGAGGATTACAAATTCAAGGTTAGTTAGCCTTAGCCTCATAAATTCAAGGCCAACAGGGACCACTTAATGATACTCTATAGTAAAATTAAAAAAAAAAAAAAAAAAAGGCCTGGAAAGACAATGGATGCCTACAGTCACAGTGCCTGGGCAGCCAGGAGTTCAGGCAGTTCAAAGCCCATCAGGAGTTCAAATTCACTCTTGGCTACAATCAGCTTCAAGGCCAGCCTGAGCTATGGGAGATTTTGTTGCAGATCTTAACAAAAAAAACCTAGAATCTGAGAAAGGGCTGAGGTAGCACTAGCTTGATGGAAGCACTTCCCCAGTAACATTATTGGTCAATCAATAAATATTGTATTTATGAGAACTATTTAATCATGACTAATGAAAATGGCTTTTCTTGGTACAACAAGAAAAACTAATCACAGAGTAAACACTCACCACTACCGCATAAACTGTAGAATTTGTCACAGTTAAATAATATTGGGTGAATGCTCAAAGTATATTATATGCTTGCATGGTCTTACAGCCGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGACAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAGAAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATGGTCTTAAATAACCCTGTGTAATAAAATAAAAATAAATTAAAAATAAAATAAAACACAAACATAACCAAAAGCCTCTATAAAGCAGATTAAAGGCATGTGCCACAACTGCCAGGCGAGAAGTACTCTTAGCCATCTCTGCAATCTTCATTTTTAAGAAAGGGCAGACATAGGATTCTTGATGCATAAGAAGCTCCTCCAGAAGCCGGGCATGGAGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGCCTACAGAGTGAGTTCCAGGGCAGCCAGGGCTATACAGAGAAATCCTGTCTCAGGAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAGAGAAAGAGAAAGAGAAGAAAGAGAAAGAAAGGAAAAGAAAAAGAAAAAGAAGAAAAGAAACTCCTGCAGATCAATAAGGAAAACATTAGGTTTAAAAGGAGATAAGGGATCAAGAAGAGTTCACAGAAAAGTAAGTGCTCTGGACCAATAAGCAAGTGGAATATACCCAGGTGCACCAGAGAGAACGGGTGAGCTTTGCAACAGCCAAATGATAGCCGTGCACACTTCTCAGATGGGCAAATGCACTGACAGTGACCGCTGGGACCCAGTAAGGTTAGTCAGCCTTTCTAGGGAAAAAGTTTCCTAGACAAACTTAGCCTGATACTATGACTCAATCAATACTAAATGAAAGCAAGCAGACATAGAAATTACTTACTTGTAAAAATACTCATCAAGATGCTGTTGATATAGAAAAGAGGCAAGAATGTGGAATTTTATAGCTATATAGTAAAATTATAAATAACCATGAACATTGCTTTTTGAAGTAATTTTAACCACAGAGGAAAATTATAACACTGCAGTTTTAACTGGTGGGCCTTGTCAGAGGGGTTCCAAAGATTACTATAGTGGGAATAAAATATTGTTTCTTTAGCATACAGAAAAGTAGTGATTCCTTAAGCAAAACTGACCAACGAGCTAATTCTAAAAGGACAGCATCTTCAAGTCACTGCCGATAGTTTTCAGAAACAGCTCACGTTGCCTTTTGAAGGCAGGCGCACTTGGAACCCGTGTCCCGTATACCAGCTACTACTACATTCAGCTAAGAGTCAAAGGATGAAACCATGAACAACAACAAAAGTCTGCTTGCTTCTTTGGGCTTTCACGTAGGGACCACCAAGACGATAGGGGGCTTGGACTGTTGCCACTAAAAGCAAATGGTGGCCTAGTCGTGTCTGGCTCACAGTAAAGCGACTGACATTGACTATATATATGACAGTATTCACTCCCAAGACGTCCTTCTGAGCAGGGATTATGATCATCTTTGCAGACAAGGAAGCTGTGACTCCAGCGGCTAAAGGACTTCAACCACTAAGCTGGGAGGCAGAATAACCCAGCCTTGAATGTAGGCAGTCTGTTTCTAGAACTTACTGTTAGCCCATTTGCTCTACAGATGTGGACTCTATGAAACAGGTAAAGCTGTGTTCTGCATTTCTCTTTAGTCTCCCCCACCACCACCTACCAGAGCCTCAATAAGAAAAACTGAATTGTGAACTCTGTGATCTTCTCCTATGTCTCACCTTCAGGCCAAATTGCACTTTGATAGCAATTGTGTAATTGTGCTCAATTCCTTAAAGGAAAGGTGCTTAGAAAATATATGCATTGTCTTCAGTTTTCCCTGCTTTAGTTATCTGTGTGATTTCTCTTCCTTGTTTAG
Seq C2 exon
ATTTGCAGCTAGAAGATCATACAATCCTCAATGGAGCCCCTGTATGAGGAGATTCTAACCCAAGGTGGAACAATAGTCAAACCTTACTACTGGCTCAGCCTTTCTCTAGGTTGCACCAACTGCCCTTACCACATTCGGACAGGCGAGGAAGCGAGAGTTCCCTACACAGAATTTCATCAGACTTTTGGATTCCCATGGTCAACGTACCCTCAAACAAAACACCTCACATTTTATGAGCTGAGAAGTTCCTCCAAGAACCTGATACAAAAGGGCCTTGCTAGCAACTGCACCGGGAGTCACAACCACCCAGAAGCAATGCTATTTGAGAAGAACGGTTACCTTGATGCAGTCATATTCCATAACAGCAACATCAGACATATCATTCTGTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAAAATGTACAACTTCCTGATGAACTATCCGGAAGTCACCCTTAGTGTTTTCTTTTCTCAGCTCTACCATACTGAAAAACAGTTTCCTACCTCAGCATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGGTCACTTTGAGTCCAATATGTGGTGGCCTTTGGCATGCTATTCTTGAAAAGTTTGTTAGCAACATCTCTGGATCAACTGTTCCTCAGCCCTTTATAGCTGGGAGAATCCTGGCTGACAGGTATAACACTTATGAAATCAACTCCATCATAGCAGCAAAGCCTTACTTCACTGATGGTCTTCTGAGCCGACAAAAAGAGAATCAGAACCGAGAAGCCTGGGCAGCTTTTGAAAAGCACCCCTTAGGCAGTGCTGCTCCTGCCCAGAGGCAGCCCACAAGGGGTCAGGACCCCAGGACTCCTGCCGTCCTCATGCTGGTGTCTAACAGAGATCTACCGCCAATTCATGTGGGTTCAACCCCACAAAAACCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGTCATCCTTCAAAGTCAAAGATGTAAAGAAACCTCCCTCGGGCAGGCCAGTGGAGGAGGTGGAAGTCATGAAGGAGTCTGCAAGGAGCCAAAAGGCAAACAAAAAGAACAGAAGCCAATGGAAGAAACAGACTCTAGTTATCAAGCCAAGAATTTGCCGTTTACTGGAGAGGTAACAAAATAAATAAATAAATAAAATGGAATTCTCTCTCCCAGGTCTGACTAAGATGGAGATAAATTGATGTTAAAAAAAACTGATTATTATAACAACTCCTATCATTGACACTGTTTTCAACATAATCCAAAACTGTCAGAAGGGACTTTATCTCTCTTTCTGAAAGTAACAGCAACAAAATAAATGGCTTTTTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055547-Apobec4:NM_001081197:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082106=APOBEC_N=WD(100=58.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: