MmuINT0022428 @ mm9
Intron Retention
Gene
ENSMUSG00000037053 | Azgp1
Description
alpha-2-glycoprotein 1, zinc [Source:MGI Symbol;Acc:MGI:103163]
Coordinates
chr5:138428667-138431460:+
Coord C1 exon
chr5:138428667-138428942
Coord A exon
chr5:138428943-138430783
Coord C2 exon
chr5:138430784-138431460
Length
1841 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAC
5' ss Score
4.06
3' ss Seq
GCACCTTTCTCCCTCCACAGATC
3' ss Score
12.48
Exon sequences
Seq C1 exon
GGTCTCACACCTTTCAGGGAATGTTTGGTTGCGAGATCACAAATAACAGAAGTAGTGGAGCTGTCTGGAGGTATGCCTACGACGGAGAGGATTTCATCGAATTCAACAAAGAAATCCCAGCTTGGATCCCCTTAGACCCAGCAGCTGCAAACACCAAGCTAAAGTGGGAAGCAGAAAAGGTCTACGTGCAGCGAGCCAAGGCATACCTAGAGGAGGAGTGTCCTGAAATGCTGAAGAGGTACCTGAACTACAGTCGATCTCACCTGGACCGAATAG
Seq A exon
GTACACACTGCTTTTATGAACTACTCCAAGTACTAAACTGAAAACCAAGGTCATTTCAGTGTAGGGGGCAATGGCAGGTTGCCCCATCAACCCCTATTAGTCCCTTCATCCTCCAGGTTTCATATACTAGGAGTCTTTCCTTTTAAACACATGATGCAGGAGCCAAAAGGAACATTCATCAAAATTTTAGGTCAGAAAAGCCAGAAGGATAGCTCAATGGTAGAGCACCTGCCTAGACTCACCCAGTGAGGGGTTGGGGTGTGGCTCAGTGGTAGAGAACCTGCCTAGACTCCCCCAGTGAGGAGTTTGGGGTGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCTTGCCTTGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAACAGTAGAGCACTGTCTGGCATGTACAGGAGTCTGGATTCAATCCTCAGCACTTAAAAAAAAAGTCAGAAACAAAACTGGCTCAATGTCAAGGATCCCTAAGTAACCTCCACTTTGCATCACATGCCACAATCCAAGCACTCAGAAAGCTGAGGCTAGAGGATTGTGATGAGTTCAAGTTGTGGTGAGTTCAAGCCCAGCCTACATGAAAAGTACAGGCCAGCTAGACCCTATCTCAGAAATCAGGTGGGAGGGACAAAAAAAAAAAAAAGAATAAACTGGGATTCAGCTTCAGCAAGCCCTCAATTTCCATAGATCAGATTCCAAATTTCATTGTAGTTCCTCAATACAGTGAGGCCTCTTGAAGACAGAACAAGAAGCTAGGCTGATGTTCTCGTAGTAGGGAGCAGTGGGGTGAGCTGTAAAGCACACTCAAGATTCTCAAAATCTGGGCATGATAGTACATGCCAGCAATCCCAGCACTCCGGGCAGGGATATCACAAGTTCAAGGCCATTCTGGACTATGTAGTCTCTGTTTTGTTATCTATGTGTATGTATGATGTTTGTATATTTGTATGTATGCATACATTTTGTCTGTATCCTGTCTTTTATGTTTTGTTATCTATGTGTATTATGATGTATGTATGTATGTATGTATGTATGTAGGTAGGTAGGTAGGTATTCTGTCTCTATGTTTTGTTATCTGTGTGTATGTATGATGTATGTATGTATGTATCCTATTTCTGCTTGTTATCTGTGTATTTATGATATGTATGTATGATGTATGTATGTATACATGTATTCTGTCTCTATGTTTTGTTATCTGTGTATATGTATGACATGTGTATATGTATGTATATATCCTGTCTCTGTTTTGTTATCTGTATGTACGTATGATGTGTGTGTATGTATGTATGTATGTATGTATGTATGTGGGTATATATGTATGATGCAGCATGAGTGGAGATCAGAAGACAACCTCAGCTATTGGTACTAACCTTCCACCTTGTTTAAGACACCAGGTTAGCCTGCCAGCCAGCTTCCAGGTATTTCCCTGTTTCTGAGCTCTGGGAATAGAGACATACACGATTGCATCAAAGTTTTACCTTTGTTCTAGAGATTCACACTTGGATCATCATGTTTATGCAGCAAGCCCTTTACCCACTGAGCTAGCTCCCCAACCCCCTGTCTCAATCAGTTACCATCAGAAGTCAATACACCATAACAAAAGGCAGGGAGTAAGAGAGTAGCTCTGTACATACCATATAACACAACAGGGAAAGCCCTTCCTGAACTTCACAAAGGTCTCTTAGAGAAGTCAGACTGGATGGTCATCCAGGGGGTTAGGAATGAAAGAGGCATGGCAGGAAAAAGCCCACCTTCAGCTCTCTATGTGCACCTTTCTCCCTCCACAG
Seq C2 exon
ATCCTCCCACTGTGACAATCACCAGCCGTGTGATCCCAGGAGGAAACAGAATATTCAAATGCCTGGCCTATGGCTTCTACCCACAAAGAATTAGTCTGCACTGGAACAAGGCCAACAAGAAGCTAGCATTTGAACCAGAAAGAGGTGTTTTTCCCAATGGAAATGGCACTTACCTCTCCTGGGCAGAGGTGGAAGTCTCCCCACAGGACATAGACCCCTTCTTCTGCCTCATAGATCACAGGGGGTTTTCCCAATCTCTCTCGGTGCAGTGGGATAGGACAAGAAAAGTAAAGGATGAAAACAATGTTGTAGCTCAGCCTCAGTAAGTTACCCTCTCTGCCTGACATGAGAGAGGTGAACTTCAGAAGTCAATGTCATCAACAAGGTCTTCCATGGGCCACTGTACAACAGCCAGCAAGAATCCAAGGAAGAGGCATGGGCACAGAAGACTTGAATGCCACAGACTGAGTTCACTCTCAATGTCAGATCAATCGCCTTGCCTTGTAAACCTCCTCCTTGATTAATCTGTCAACCCTCACAATTGCCCTCATGCCTAGAACAGCACAGAAAGGAAGGCATTTTAAACTCAGAGATGCTAGAGAAGTGTGAGTTGATTTTATCATGTATTCTGCCCCCACATACTTGATTCAATTGTGAACATCTTCATATTCACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037053-Azgp1:NM_013478:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=82.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGTCTACGTGCAGCGAG
R:
CCCCCTGTGATCTATGAGGCA
Band lengths:
347-2188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: