Special

MmuINT0023311 @ mm10

Intron Retention

Gene
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21573857-21583142:+
Coord C1 exon
chr17:21573857-21573956
Coord A exon
chr17:21573957-21583029
Coord C2 exon
chr17:21583030-21583142
Length
9073 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TATTAATTTTACTTTTCCAGTTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GACTACAAGCTGGCTATTCATCATTCCTGACAGAGAAATTTAAAGAAGAGAAACAAACAAACAAAAAAAAATGGCTGATTCTCCAGTAAACATGTCCCAG
Seq A exon
GTCAGTGGTCATGTCCACATTTTTCTAGAAATGTTATATTTTCAAGCACTACAAACCTTAATTTTCTGCTTCTGATAATTTGTTTTTTAACTTTATTATAAAACACATTTGAATCAAACACTGAAAATAATCAGACCCAGTCTACCCAACTGAATGAAATTTTATATTGGTTACATTAGTCATTGGGAACAAAAAGTCTAGAGACTCTCATTTGATTTGATACAAGGGTATGGAATATGAGAAATTCTTTCCCCAAGATTCATGTTTTAGAACACATCAGAGAGTTCATACTGGAGAGAGAACTTACAGATGTACTGAATGTGACAAATCTTTGATTAGGTGCTCTCACCTTAGAGCACACTAGAGAGAAACATACCATTCTAAATAATGTAACATAGCATTTATCCAGTATGCTCTCTGCTTATAAATCCCATGATATTCATAGTAAAACCATAAGAATAAGAAACATGAGAAAGCCTTTAATTAGCCTTTAAACCTCAGAAAATATGAGTCTCAGTTAAAACAATGATTTGCAAATTGAACTGTGTGAAGTTACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGGTACTTCTCTGCTTGTATTACTGTGTACTACATGCATGCTTGATGCCTGTGGGGACTAAAGGGTGCATCAGATAGATCCCTTGGTGCTATGCTTAAAGGGAGTTGTGAACTGCTATGTGTGTTGGGAGGTGAATCCCAATACTCTCCATAAGAGCAGCCAGTGGTTTTAACCACTAGGCCATCTCTCTAGCTCCTGGGAAAAGCTGTAGTAAAAATATTCATCTTGTTTAGCATCAAAAGTTCATAATTCTAGGCAAGGTGGGACACATCATTAATTCCAGTATTTGGGTGGCAAAGGCAAGATCTCTGGTCTACATAGCAAGTTCTAGGATACCCTGAATGAACTATATATACACCATATCTCAAAAAATAATAATGACAAAAGGTAATTAAATAAGTTTTAAAGACTTCTAATTGTGTTGTAAATCACAAAGGTCATACTTCTGAGAATCCATATAAAGGTATGTCATATATAATCTCCAAGTCTTGCTTCCCATTGAAAATTATACCCACCAAGTGCATTGAATTCAACAAAGCCTTTATCTAGTGCTGAAATTGCTGACGTAAAAGAAATTCATCAAGAGAGAAAACACATAAAAGTACTCTAATAAAGTATCATTTCTCATTCATCTTCAAAATCATCATAGTAGAGTCAAACCTTACAAATAGTAAGAAGATAAGAAAGTGTGAAGATGTAGATGAGATATGTATGTGACATCACAGGCATGCTCAGACAGAGCTTAAAAATCCCCAATTATTCTGGGCTTCCTGGTGTAACCTTTAGTACCTGCCCTCTGGAGGCAGAAGCAAGTGGATCTCTGAGTTCAAGGTGAGCATGGTCTACACTGCAAATTCTAAAACAGCCAGGACTACACAGAAAAATCCCATGCAAGAAAAACCAAAGTGGTTAAAAAAATAAGGAAGAAATCTCTGAAGGTATAAAGAAATTCATTTTACACTACAGAAGAAAAATTGGGAAGTATTAACCAATACTCTAAATTAAAAATCGTATAGCTGCCATTAACAGCCAGTCCTCCCCACACCCCTTGAGGTAAACAAGACTAGAGGATCCTCTGCTAACTATGATGAAATGGTAATCGGTCCTATCTTACACAATTCCTCGTTCTTAGTACTTTCTGCACAGTTATGGGTCTCTTCATTATCCACCTCCTACAAGAAGAGGAGGGTTCTTTTACCAGACTGGAAAGTAGTGCAAACTGTTAATTATAAATCTGAATATTTAGATGGCAGGTTAATAATGTATTTGTTAAGAAAACATCAATAAGTTGTGCCCTTGGATTTATACTTCCAAGACTTGGGTTTTGGCCATGGCATGAATTCATCTCTAGCTCAGGCTTCAAGTTTGGTCAAGAGAGAGGTTAGCTACTCTTAAGCAGTCATGCCAGTATAGCTCCAATGCATACTTGTTACCCAGTAACTTGATAGTGAAGGATATAGATTTCAAGATTGTACTCTCAGTATCTCCAACCCAAAGCTTTAGGTGTCTTCAGCAACTCCATGTACTTATGATTGCCAGCAAAAGGACTGGCAATGGCCTTTTTTGTTTGGAGTGCCTCTGGAGACTCCTTGACTAGTAATCTTAGGCAGATAATAGGTACCTGGTAGAGAGTTTCACTCAGTACCCCTGTTGTCTGGAAGGAGCATCATTTACCCATGTGGGATACTTCTGTCAAAAAGGCTTATAAGTGATATTTTCTTTAACTTGTAAAATAGTCAAATTTCATAAAACTTCATATATCCTTTTGGTTACTCCAGCCATTCTTCCTCCTTTCTTCCTGCCCCATCCCCCGTTTCATATTTAAAACATGTTTTACTTTATGCCCAGTTCTTTCATGTCACATGTGATACCATCCTGTCATTATAAATTTTTTAGTTTGTTTGCAAAATGATAGGGGCCTATGTATCTTCCTTATAGACGTCTCCTTTGGGTTCACCACTCAGCAGCCCTTTCTCCTTTCCACTACTTCACTGTGTACTTGAACCATTCTTCCCCAGTATTCGCCTTCTCTAATTTCATATCATCCATAACCTACTATCCATTCTTTCTTTCTGAGTCTCCCTCTATTGGTCCATTTCTAACTTCCTAGCATCTACATGCAGTCTTATTTCAACAAATAAAACAGAAACATTAAAGCTAAGATGCACATATGAGAGGAAATGTGTGCTGTTTGACTGTTGGGGATTAGTTGGCAGAAGTCTCCATATTTTCCAATTGCCTACATTTACATCCAGATTTCACACTTTCATTTTTATTTACAACTGAATAATATACCATGTTCTATAGATACATATCATATTTTTATAAAAAATTTTTATTTGCCTATGTGTCAGGTGATGGATAACTGAGTTGATTGCAGGCCTAGACATTGTGAATAAAGCAAGAAGAACATGATGGGCAAATGATCATTGGTAAGATAGAAACTCCCTGGATTTGATAGGGAGTAACCAAGATAGGTTACTGTGTATCAGAGTTCTCTAAGGTTGAACCTTTTCATGTTGAAGGATACTCTGTAGAAAAATAGGGTGTTATAGGAAAGGAAAATTAACTGGATGCCTTAAAGGCTAGGGAGTGAATGGGCCATGAACTGTCCAACCTATAGAGACTCTCCCCAATGCTCAGAAATAGGAAACTTAATAGTTTTAGGAAGTCTCAGAAACTGGCAAGATTCACTATCGCCTTTCTGCCTCAAGCTTACATAATTGGCAAGGACCGCTGACAGGGTCATACAAGATGAGTTTTACAGAAGATGCTCAGACCAGCCATGAAGCAGACACTGGTCAAGCTGCCTGGACTCTGGAGCACAAGGCACGCTCATGGAGGAAGTGGCTTATTAGATCACTTCTCAACTCAGGTGAGATGCATGGAACTGCACTGATCCCCAGGTTTCCATCTTTATTATCCATGACTCTCACAGGTGGCAGCTATCATTGAATCCTTTCTGTTTCTATCAGAAACCCCCTCACCCACGTTTTTATAAGTCACCCCAATAAAACTCAGTAATCCACTGGGCTTTACAAATGACCCAGGGGTTAAGAATACTGTGTGTTCCTTTGAAGATTCACTTTATTTTCCCAGCATCCTCACATGGGCGCTCAATCTCTCAGCTCAACTCCAGAATCTACAATGCCCTTTCCTGGCCTCTGCGAGGACGAGGGACACATATCATACACAGACATAAATGCAGACAACACGACTAAAAAAGAAACCACACTGGTTCGTTAAGGTGGACTTTGTTGGTTCCCCAACATTGATTTATTATTATTTCCTTATCTGGGATAAGTAGATGATTGTTCTTGTTTCCACAGGAATAATATCACACATTAGTGCTGTAATTAGGTCACATAGAAGTTTTCTTTCTTTCAGTTATTCATTTATTTATCGGGGCATCTAGACTGACTTCAAAAGTTGATTCTCCAGTTTTTTGGGTTTTGGTTTTTTTGTTTGTTTTTGTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCATGCACCAACACTGCCCAGCGATTCTCTAGTTTTTAATATCATGGTGGCTCACAACCACCTATAATGGGATCTGATGGCCTCTTATAGAGTCTCTGGAGACACCAACAGTGTACTTACATGCATAAAAAAAATAAATCTGAAAAAAAGAAAAGCAGTATTTGAGCTGGGCATAGTAGCACATGCCTTTAAACACACATTTCCACAGAAAACCCTGTCTTGAATGAATGAATGGTCCTCTCAAACTTCTATCATTAGCTATTTAACACTGACATACATATGTGTGTAACATACGCATATGGATGCAGAATGTGTGTGTGTATGTGTGTATGTGCATTTGTATGGGCACATTTAATACTGCCCATTTTTACCTCCTACCTCTCCACTATCCTGGTCCACAATTCCAACAGTCACTCTACTGTGTTCATCTCTATTCATACTGCTTGTAATCCAGAGATGAACTGAAGGAATGCAAGGACACAAGCAGGGCTATCTTGTCTGAGTCAACACCATCTGGCCGGAACCTCCCCTCTGTCTATTGCCCCTTGACGCGGGGTAAAGTCATACATCAACTAGTTGCTATGTGAACAAAGATAAGCCCCCAGCCCACAGGAACAAAGTCCTGATGCCCTTTTGCTGACATGTAATCTTTCTGTTAATGATTGAATGAGCCAATCCCATACCTTTGTTGAAATTCCTCGTACCCCTATCCCTTTTTCTTCCATAAAAACCCCTAACTTTTGAGCCTTGGGGCCTACATCTGTTATCTCCTGTGTGAGATACATGTTGGTCCGGAGCTCTGTCATTAAACTACTTCGTGTATTTACATCAAGGCGTTCTGTTCTGTTTGTGATTCTTGGGTGCACGCCGAATCGAGAGTTGAGTGGGGGTTTCCCCACTAGGTTCTTTCAGAACCAGAGCCATTTGTGAGACTGTGGGTTTGGAGCCTGATGTGCTCAGCACAGGATAACAACTAAAGGCCATGACTCTTCTCCTTGAATCTATCCATAGCCAATGTCTGAGAGGTAAAGTGAGCTGTTGTTCCCTTTCCTAGAATGACTGTGGTCTTGTGTGAGGCCAGTACAGATAAAGCCCAGTTGTTGTTGGTTACTGATTACAATAGTTGTATGGAGTCGAGAGAATGGTGTATCTTAGCCTTTCCCCTCTTTCCCTTCTTATTGCATAACCACTTCTTCCTTGGAGTTTCCACAGCTAGAGATGAATGGTGTAGGTGACTTTTTGAGACCTTACTTATTTTATGCATCTGGGACAGCCAAGAGTTTCAGTGTTTACCACTCCGTTAGAAGCAAAGAAAGGAAGAAAGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAACTGTGTTTTTTTTTCTCACTTTTGCACGAGTCACAGAAGTGTAACTTGTTTCTTAGTTTACTGACAAGACCGCCATCTAGTGGTGAAAGTAGTACAGTGGGATGAGTTCAGGTCTGGGCTGATAGCTGTGGGCCAACCACTGGCTACATGAGATTGCTCCCTTTCCCTTCTTCTCGTGTTTGTTTTTGGGGGATGGGACTCTGGCACCTGATTTTAGCCTTTTGTTGTTTGGTATCCAGTATGTGACCGAGAGGCTGATAGTCAGATAAAGGTCTGAGGTTGCCTATCTGGTATCTGAGGATTCAGAACTCACAATGGGGGTCAGATAATGGGATGCAGCATCCTACCCAATCCACTTGAGTCTAGGCTGGGAGCAAGCACGCAGCTGTGCAGAGCAAGTACAGGGCAGCTTGGCAGCTGAACCTGTGTTGAAGGAAGCATGAAACTGAGTAGGAGGGATCAGTCTCCCTGTGGCATATTGGCCTAGTTTAGAGGAAGGGTATAGTGTAGGTGGGGTTAGTGGAATGAAGCCAGGGAAACTGGGAAACAATGTGTGTTTTTCATAGGCAGTGGGACTAAAGAGTCAAAGACAGAAGTATCAAGAACCTGATTTTGTACTGAGCTCTTGGGGGGGGGGGGGCTGCATCGTGGGCAGTCATATAGTGGAGACCTGACTGCAGAGGACTTGAGGGGGTGGGGGTAGGAGGTGGGGGAGTAGGGGTACCTCGGGACCAAACACTTCCCTAAGCTGCAGGTGCCAAGTGGGTCATCCTGGGAGACTCAGCAGTCTGCAACCATATAGATGGGAATAGATGCACTGGGTCCATGAGCCTCCTAGATCAGAGGAACTACAGGAACAGGCAGGAAGGGAGGAGAGAGTGATCATTTTCTCTATTGTTCATAAAGATGACAGCTCTCTAAATTTTTGCTGTCAATAAATTTTCAATAATATTAACTGGAATAATACTATTTCTAAATCAATCTTATGGCTGCTAGATATGCTTATAAGAATAAACCAGTAGAATATTTGAATTTATCTGTTGATATTTGCAACGCGGTCTCTTTGCTGTGGTGGAAAGGACAAAGCTTGAAATTTACAATCATCCATTATAATATCTGTGATCTACCACTTCCCTATTCAAGAGAGTGGCATATGTACCTAGGGACTTGGATTTCCTGAGAGCTTTTAGATAGGAGTCATGAAAGGAACTCCTGCAAATTTAATTGAATCTAAAATACAGTTTGTGAGTTCTACAGGTATGGATGTAAATACTAACTTTTAAAAGTAAACTGTCTATCCATCATTAATTTTCCATCTGAAACGTATGTAATCTGTGATGTAAATACAGTGTTGTAAGAAGTGTGCAACCAGATTTGATGAGGCTCTGCTTTTATCTCAGCACTCAAGAGGCAAAGGCAGCTGGGTCTCAATGAGTTGTAGGCTGGCCTGGTTTATGTAGTATTTCAGGACAGGCAGAGCTACATGGTAAGACTCTGTCTCAAAAATCAAGGAGAAAAAAAAAGTAACTACAAGAAAGAGGGGGGATTGAAGGAAGGAAAGAAAGACAGAAAGAAAGAAAAGGAGGGAAAAAAGGAAAAAAAGAAAAAAGAAATGTGTCTTGTACTGAGTTCTTAATGTTGTAAATTAGAGTCTGGAAATCACAGTATGTTCTTTGAGGGAATCGGGTCACAGTATTTTCACAGTTAGAAAGGATGTTATAAACCAGTTTGTGGTGGTGGCACACACTTTTAATCCCAGCATTCAGGAAACAGAAGCAGGTAGATCTTGGAGTTCTCTGCCAGTCTGATCTACAGAGTTTAAGGACAGCCAGACTACACAGAGAAACCCTGTTTTGGAGGAAAAAAAGAAAGAAAGGAAGAGAGATAGGAACAAAATTAAAAGGTATCATATAATAGAAATAATATTATGAAGCATCTTGTGAATAATTATGATAACTCAACTATATCAAAAAAGCATCTGCAATCTTCTTGTCTTCCTGATTCAACAAAAGCATTCTGCTCATGGACACTTGGACACATGGCCAAACCGTTACATAGAAGTCACCATGTAGGCCAAGCTGACCTGGAATTCACAGATTTCCACCCACCTCTATCTCTTCAGTGCTCACATTAAAGTTGTGCACCAGCAGGAATGTTCAAACTGTTGTCTTTTATTTTGTGGTCTGTTGACAATCAGTGGTGTGACTGTGGTTTGGTAGAAAATATATGGCTTGTGTAGAGAACATTGTCAGCCCAAGGAAGTTTCATTTACACTTCACATGTGTATGCTTTCCCAGACTGATATGTATGGTAGACATATGTTATGGTAGGATAATACCATAATTTCTCATGAGTTTTTAGAAATCTTTTCTGTTATGTTACTCTTGCTGTGTTTATATCTTGCTCTTCTCTATAAATAAATGCCTCTCATACTTTTTCCATTTTCTCCTTAAGATCGTTCATTCCCAGTTTTACTTTTCTGGTTAGTGCAGTTATTCCAGGTTGTGAACTCACATTTGAAGATTTGGAGGGAGGAACTTTCTATGAAAGAGAACATGCAGTATCTGTCTTTTGGGTTTGACTTATTCCACTCAGTGTGATCTGTACTAAGTCCACACATTTACCTGCAAATGTCGTGACTTCAATTTTCTTTACACTTCAATAATATTTTTTAGTGTACATATACATTTTTACTTCTCAATTGGAGGACATTTATGTTCTTCCATTTGGTACCTGTTATGACTCTAGCGTCAATGTGCAATGTTGAGCGCATATCTGTGGAGTAGGGTGTTGAGCCCTTTGAGCATATTCTAAGGAGTAGAAGAACTGGGTTACATACGAGATTTATTTAACCTGTGGGTTTGTTTATTTAACTGACAATTCTTTATATTGATTTATAGAATGGCTATTATTTTGTTTATAGTGTTTTTATTCCCTATGTTTTTTTTAAATGTTGTTGCTGGTTAGAATATTTGTAGAATTCTTCTTTCTTTAATGTGAGAAAGAATGGCTTGCACCTTTGAGTTTGGTTGATTACTTCCCTATTCTCCTGTATTCATCTATTCTTCATATGAAATGTATTATTTCCCATGTTCTTCTAAATAATTTCTCAAATTCTCCTGTGTATGTGTTGCCTCTAATTTATTATGTGCTATGCTGCTTTAGTAAAATGAATTGTGTTAATTCATGACTATCTTCAAATGCACTTCTGTCTCCCTCTTTCGAGAGAATATTTTTCTGAGTGCAATAATATAGTTGCTGGTGTTTTTCTCTCCAAGTTTTAAATATTTTTCCGTGCTCGCCTGGCTCTGGGATTACTGACCAGACACCAGGTAGTATTTTGTTGCTTGGGCCTTTTTATGTGATCTCCCATTGATTTTTTTTTAACAACATTCAGTATTAATTTTACTTTTCCAG
Seq C2 exon
TTTGACCCATTGATATTAAAGGACCACTAGCCAACTATTCATTCTTCCTCAAAGAGAAAATCAAAGAAGAGACACAGAAAGAAATGGCTAAATCTCCAGTAAACATGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931:ENSMUST00000088787:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.100
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types