MmuINT0023311 @ mm10
Intron Retention
Gene
ENSMUSG00000067931 | Zfp948
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21573857-21583142:+
Coord C1 exon
chr17:21573857-21573956
Coord A exon
chr17:21573957-21583029
Coord C2 exon
chr17:21583030-21583142
Length
9073 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TATTAATTTTACTTTTCCAGTTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GACTACAAGCTGGCTATTCATCATTCCTGACAGAGAAATTTAAAGAAGAGAAACAAACAAACAAAAAAAAATGGCTGATTCTCCAGTAAACATGTCCCAG
Seq A exon
GTCAGTGGTCATGTCCACATTTTTCTAGAAATGTTATATTTTCAAGCACTACAAACCTTAATTTTCTGCTTCTGATAATTTGTTTTTTAACTTTATTATAAAACACATTTGAATCAAACACTGAAAATAATCAGACCCAGTCTACCCAACTGAATGAAATTTTATATTGGTTACATTAGTCATTGGGAACAAAAAGTCTAGAGACTCTCATTTGATTTGATACAAGGGTATGGAATATGAGAAATTCTTTCCCCAAGATTCATGTTTTAGAACACATCAGAGAGTTCATACTGGAGAGAGAACTTACAGATGTACTGAATGTGACAAATCTTTGATTAGGTGCTCTCACCTTAGAGCACACTAGAGAGAAACATACCATTCTAAATAATGTAACATAGCATTTATCCAGTATGCTCTCTGCTTATAAATCCCATGATATTCATAGTAAAACCATAAGAATAAGAAACATGAGAAAGCCTTTAATTAGCCTTTAAACCTCAGAAAATATGAGTCTCAGTTAAAACAATGATTTGCAAATTGAACTGTGTGAAGTTACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGGTACTTCTCTGCTTGTATTACTGTGTACTACATGCATGCTTGATGCCTGTGGGGACTAAAGGGTGCATCAGATAGATCCCTTGGTGCTATGCTTAAAGGGAGTTGTGAACTGCTATGTGTGTTGGGAGGTGAATCCCAATACTCTCCATAAGAGCAGCCAGTGGTTTTAACCACTAGGCCATCTCTCTAGCTCCTGGGAAAAGCTGTAGTAAAAATATTCATCTTGTTTAGCATCAAAAGTTCATAATTCTAGGCAAGGTGGGACACATCATTAATTCCAGTATTTGGGTGGCAAAGGCAAGATCTCTGGTCTACATAGCAAGTTCTAGGATACCCTGAATGAACTATATATACACCATATCTCAAAAAATAATAATGACAAAAGGTAATTAAATAAGTTTTAAAGACTTCTAATTGTGTTGTAAATCACAAAGGTCATACTTCTGAGAATCCATATAAAGGTATGTCATATATAATCTCCAAGTCTTGCTTCCCATTGAAAATTATACCCACCAAGTGCATTGAATTCAACAAAGCCTTTATCTAGTGCTGAAATTGCTGACGTAAAAGAAATTCATCAAGAGAGAAAACACATAAAAGTACTCTAATAAAGTATCATTTCTCATTCATCTTCAAAATCATCATAGTAGAGTCAAACCTTACAAATAGTAAGAAGATAAGAAAGTGTGAAGATGTAGATGAGATATGTATGTGACATCACAGGCATGCTCAGACAGAGCTTAAAAATCCCCAATTATTCTGGGCTTCCTGGTGTAACCTTTAGTACCTGCCCTCTGGAGGCAGAAGCAAGTGGATCTCTGAGTTCAAGGTGAGCATGGTCTACACTGCAAATTCTAAAACAGCCAGGACTACACAGAAAAATCCCATGCAAGAAAAACCAAAGTGGTTAAAAAAATAAGGAAGAAATCTCTGAAGGTATAAAGAAATTCATTTTACACTACAGAAGAAAAATTGGGAAGTATTAACCAATACTCTAAATTAAAAATCGTATAGCTGCCATTAACAGCCAGTCCTCCCCACACCCCTTGAGGTAAACAAGACTAGAGGATCCTCTGCTAACTATGATGAAATGGTAATCGGTCCTATCTTACACAATTCCTCGTTCTTAGTACTTTCTGCACAGTTATGGGTCTCTTCATTATCCACCTCCTACAAGAAGAGGAGGGTTCTTTTACCAGACTGGAAAGTAGTGCAAACTGTTAATTATAAATCTGAATATTTAGATGGCAGGTTAATAATGTATTTGTTAAGAAAACATCAATAAGTTGTGCCCTTGGATTTATACTTCCAAGACTTGGGTTTTGGCCATGGCATGAATTCATCTCTAGCTCAGGCTTCAAGTTTGGTCAAGAGAGAGGTTAGCTACTCTTAAGCAGTCATGCCAGTATAGCTCCAATGCATACTTGTTACCCAGTAACTTGATAGTGAAGGATATAGATTTCAAGATTGTACTCTCAGTATCTCCAACCCAAAGCTTTAGGTGTCTTCAGCAACTCCATGTACTTATGATTGCCAGCAAAAGGACTGGCAATGGCCTTTTTTGTTTGGAGTGCCTCTGGAGACTCCTTGACTAGTAATCTTAGGCAGATAATAGGTACCTGGTAGAGAGTTTCACTCAGTACCCCTGTTGTCTGGAAGGAGCATCATTTACCCATGTGGGATACTTCTGTCAAAAAGGCTTATAAGTGATATTTTCTTTAACTTGTAAAATAGTCAAATTTCATAAAACTTCATATATCCTTTTGGTTACTCCAGCCATTCTTCCTCCTTTCTTCCTGCCCCATCCCCCGTTTCATATTTAAAACATGTTTTACTTTATGCCCAGTTCTTTCATGTCACATGTGATACCATCCTGTCATTATAAATTTTTTAGTTTGTTTGCAAAATGATAGGGGCCTATGTATCTTCCTTATAGACGTCTCCTTTGGGTTCACCACTCAGCAGCCCTTTCTCCTTTCCACTACTTCACTGTGTACTTGAACCATTCTTCCCCAGTATTCGCCTTCTCTAATTTCATATCATCCATAACCTACTATCCATTCTTTCTTTCTGAGTCTCCCTCTATTGGTCCATTTCTAACTTCCTAGCATCTACATGCAGTCTTATTTCAACAAATAAAACAGAAACATTAAAGCTAAGATGCACATATGAGAGGAAATGTGTGCTGTTTGACTGTTGGGGATTAGTTGGCAGAAGTCTCCATATTTTCCAATTGCCTACATTTACATCCAGATTTCACACTTTCATTTTTATTTACAACTGAATAATATACCATGTTCTATAGATACATATCATATTTTTATAAAAAATTTTTATTTGCCTATGTGTCAGGTGATGGATAACTGAGTTGATTGCAGGCCTAGACATTGTGAATAAAGCAAGAAGAACATGATGGGCAAATGATCATTGGTAAGATAGAAACTCCCTGGATTTGATAGGGAGTAACCAAGATAGGTTACTGTGTATCAGAGTTCTCTAAGGTTGAACCTTTTCATGTTGAAGGATACTCTGTAGAAAAATAGGGTGTTATAGGAAAGGAAAATTAACTGGATGCCTTAAAGGCTAGGGAGTGAATGGGCCATGAACTGTCCAACCTATAGAGACTCTCCCCAATGCTCAGAAATAGGAAACTTAATAGTTTTAGGAAGTCTCAGAAACTGGCAAGATTCACTATCGCCTTTCTGCCTCAAGCTTACATAATTGGCAAGGACCGCTGACAGGGTCATACAAGATGAGTTTTACAGAAGATGCTCAGACCAGCCATGAAGCAGACACTGGTCAAGCTGCCTGGACTCTGGAGCACAAGGCACGCTCATGGAGGAAGTGGCTTATTAGATCACTTCTCAACTCAGGTGAGATGCATGGAACTGCACTGATCCCCAGGTTTCCATCTTTATTATCCATGACTCTCACAGGTGGCAGCTATCATTGAATCCTTTCTGTTTCTATCAGAAACCCCCTCACCCACGTTTTTATAAGTCACCCCAATAAAACTCAGTAATCCACTGGGCTTTACAAATGACCCAGGGGTTAAGAATACTGTGTGTTCCTTTGAAGATTCACTTTATTTTCCCAGCATCCTCACATGGGCGCTCAATCTCTCAGCTCAACTCCAGAATCTACAATGCCCTTTCCTGGCCTCTGCGAGGACGAGGGACACATATCATACACAGACATAAATGCAGACAACACGACTAAAAAAGAAACCACACTGGTTCGTTAAGGTGGACTTTGTTGGTTCCCCAACATTGATTTATTATTATTTCCTTATCTGGGATAAGTAGATGATTGTTCTTGTTTCCACAGGAATAATATCACACATTAGTGCTGTAATTAGGTCACATAGAAGTTTTCTTTCTTTCAGTTATTCATTTATTTATCGGGGCATCTAGACTGACTTCAAAAGTTGATTCTCCAGTTTTTTGGGTTTTGGTTTTTTTGTTTGTTTTTGTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGCAGTCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCATGCACCAACACTGCCCAGCGATTCTCTAGTTTTTAATATCATGGTGGCTCACAACCACCTATAATGGGATCTGATGGCCTCTTATAGAGTCTCTGGAGACACCAACAGTGTACTTACATGCATAAAAAAAATAAATCTGAAAAAAAGAAAAGCAGTATTTGAGCTGGGCATAGTAGCACATGCCTTTAAACACACATTTCCACAGAAAACCCTGTCTTGAATGAATGAATGGTCCTCTCAAACTTCTATCATTAGCTATTTAACACTGACATACATATGTGTGTAACATACGCATATGGATGCAGAATGTGTGTGTGTATGTGTGTATGTGCATTTGTATGGGCACATTTAATACTGCCCATTTTTACCTCCTACCTCTCCACTATCCTGGTCCACAATTCCAACAGTCACTCTACTGTGTTCATCTCTATTCATACTGCTTGTAATCCAGAGATGAACTGAAGGAATGCAAGGACACAAGCAGGGCTATCTTGTCTGAGTCAACACCATCTGGCCGGAACCTCCCCTCTGTCTATTGCCCCTTGACGCGGGGTAAAGTCATACATCAACTAGTTGCTATGTGAACAAAGATAAGCCCCCAGCCCACAGGAACAAAGTCCTGATGCCCTTTTGCTGACATGTAATCTTTCTGTTAATGATTGAATGAGCCAATCCCATACCTTTGTTGAAATTCCTCGTACCCCTATCCCTTTTTCTTCCATAAAAACCCCTAACTTTTGAGCCTTGGGGCCTACATCTGTTATCTCCTGTGTGAGATACATGTTGGTCCGGAGCTCTGTCATTAAACTACTTCGTGTATTTACATCAAGGCGTTCTGTTCTGTTTGTGATTCTTGGGTGCACGCCGAATCGAGAGTTGAGTGGGGGTTTCCCCACTAGGTTCTTTCAGAACCAGAGCCATTTGTGAGACTGTGGGTTTGGAGCCTGATGTGCTCAGCACAGGATAACAACTAAAGGCCATGACTCTTCTCCTTGAATCTATCCATAGCCAATGTCTGAGAGGTAAAGTGAGCTGTTGTTCCCTTTCCTAGAATGACTGTGGTCTTGTGTGAGGCCAGTACAGATAAAGCCCAGTTGTTGTTGGTTACTGATTACAATAGTTGTATGGAGTCGAGAGAATGGTGTATCTTAGCCTTTCCCCTCTTTCCCTTCTTATTGCATAACCACTTCTTCCTTGGAGTTTCCACAGCTAGAGATGAATGGTGTAGGTGACTTTTTGAGACCTTACTTATTTTATGCATCTGGGACAGCCAAGAGTTTCAGTGTTTACCACTCCGTTAGAAGCAAAGAAAGGAAGAAAGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAACTGTGTTTTTTTTTCTCACTTTTGCACGAGTCACAGAAGTGTAACTTGTTTCTTAGTTTACTGACAAGACCGCCATCTAGTGGTGAAAGTAGTACAGTGGGATGAGTTCAGGTCTGGGCTGATAGCTGTGGGCCAACCACTGGCTACATGAGATTGCTCCCTTTCCCTTCTTCTCGTGTTTGTTTTTGGGGGATGGGACTCTGGCACCTGATTTTAGCCTTTTGTTGTTTGGTATCCAGTATGTGACCGAGAGGCTGATAGTCAGATAAAGGTCTGAGGTTGCCTATCTGGTATCTGAGGATTCAGAACTCACAATGGGGGTCAGATAATGGGATGCAGCATCCTACCCAATCCACTTGAGTCTAGGCTGGGAGCAAGCACGCAGCTGTGCAGAGCAAGTACAGGGCAGCTTGGCAGCTGAACCTGTGTTGAAGGAAGCATGAAACTGAGTAGGAGGGATCAGTCTCCCTGTGGCATATTGGCCTAGTTTAGAGGAAGGGTATAGTGTAGGTGGGGTTAGTGGAATGAAGCCAGGGAAACTGGGAAACAATGTGTGTTTTTCATAGGCAGTGGGACTAAAGAGTCAAAGACAGAAGTATCAAGAACCTGATTTTGTACTGAGCTCTTGGGGGGGGGGGGGCTGCATCGTGGGCAGTCATATAGTGGAGACCTGACTGCAGAGGACTTGAGGGGGTGGGGGTAGGAGGTGGGGGAGTAGGGGTACCTCGGGACCAAACACTTCCCTAAGCTGCAGGTGCCAAGTGGGTCATCCTGGGAGACTCAGCAGTCTGCAACCATATAGATGGGAATAGATGCACTGGGTCCATGAGCCTCCTAGATCAGAGGAACTACAGGAACAGGCAGGAAGGGAGGAGAGAGTGATCATTTTCTCTATTGTTCATAAAGATGACAGCTCTCTAAATTTTTGCTGTCAATAAATTTTCAATAATATTAACTGGAATAATACTATTTCTAAATCAATCTTATGGCTGCTAGATATGCTTATAAGAATAAACCAGTAGAATATTTGAATTTATCTGTTGATATTTGCAACGCGGTCTCTTTGCTGTGGTGGAAAGGACAAAGCTTGAAATTTACAATCATCCATTATAATATCTGTGATCTACCACTTCCCTATTCAAGAGAGTGGCATATGTACCTAGGGACTTGGATTTCCTGAGAGCTTTTAGATAGGAGTCATGAAAGGAACTCCTGCAAATTTAATTGAATCTAAAATACAGTTTGTGAGTTCTACAGGTATGGATGTAAATACTAACTTTTAAAAGTAAACTGTCTATCCATCATTAATTTTCCATCTGAAACGTATGTAATCTGTGATGTAAATACAGTGTTGTAAGAAGTGTGCAACCAGATTTGATGAGGCTCTGCTTTTATCTCAGCACTCAAGAGGCAAAGGCAGCTGGGTCTCAATGAGTTGTAGGCTGGCCTGGTTTATGTAGTATTTCAGGACAGGCAGAGCTACATGGTAAGACTCTGTCTCAAAAATCAAGGAGAAAAAAAAAGTAACTACAAGAAAGAGGGGGGATTGAAGGAAGGAAAGAAAGACAGAAAGAAAGAAAAGGAGGGAAAAAAGGAAAAAAAGAAAAAAGAAATGTGTCTTGTACTGAGTTCTTAATGTTGTAAATTAGAGTCTGGAAATCACAGTATGTTCTTTGAGGGAATCGGGTCACAGTATTTTCACAGTTAGAAAGGATGTTATAAACCAGTTTGTGGTGGTGGCACACACTTTTAATCCCAGCATTCAGGAAACAGAAGCAGGTAGATCTTGGAGTTCTCTGCCAGTCTGATCTACAGAGTTTAAGGACAGCCAGACTACACAGAGAAACCCTGTTTTGGAGGAAAAAAAGAAAGAAAGGAAGAGAGATAGGAACAAAATTAAAAGGTATCATATAATAGAAATAATATTATGAAGCATCTTGTGAATAATTATGATAACTCAACTATATCAAAAAAGCATCTGCAATCTTCTTGTCTTCCTGATTCAACAAAAGCATTCTGCTCATGGACACTTGGACACATGGCCAAACCGTTACATAGAAGTCACCATGTAGGCCAAGCTGACCTGGAATTCACAGATTTCCACCCACCTCTATCTCTTCAGTGCTCACATTAAAGTTGTGCACCAGCAGGAATGTTCAAACTGTTGTCTTTTATTTTGTGGTCTGTTGACAATCAGTGGTGTGACTGTGGTTTGGTAGAAAATATATGGCTTGTGTAGAGAACATTGTCAGCCCAAGGAAGTTTCATTTACACTTCACATGTGTATGCTTTCCCAGACTGATATGTATGGTAGACATATGTTATGGTAGGATAATACCATAATTTCTCATGAGTTTTTAGAAATCTTTTCTGTTATGTTACTCTTGCTGTGTTTATATCTTGCTCTTCTCTATAAATAAATGCCTCTCATACTTTTTCCATTTTCTCCTTAAGATCGTTCATTCCCAGTTTTACTTTTCTGGTTAGTGCAGTTATTCCAGGTTGTGAACTCACATTTGAAGATTTGGAGGGAGGAACTTTCTATGAAAGAGAACATGCAGTATCTGTCTTTTGGGTTTGACTTATTCCACTCAGTGTGATCTGTACTAAGTCCACACATTTACCTGCAAATGTCGTGACTTCAATTTTCTTTACACTTCAATAATATTTTTTAGTGTACATATACATTTTTACTTCTCAATTGGAGGACATTTATGTTCTTCCATTTGGTACCTGTTATGACTCTAGCGTCAATGTGCAATGTTGAGCGCATATCTGTGGAGTAGGGTGTTGAGCCCTTTGAGCATATTCTAAGGAGTAGAAGAACTGGGTTACATACGAGATTTATTTAACCTGTGGGTTTGTTTATTTAACTGACAATTCTTTATATTGATTTATAGAATGGCTATTATTTTGTTTATAGTGTTTTTATTCCCTATGTTTTTTTTAAATGTTGTTGCTGGTTAGAATATTTGTAGAATTCTTCTTTCTTTAATGTGAGAAAGAATGGCTTGCACCTTTGAGTTTGGTTGATTACTTCCCTATTCTCCTGTATTCATCTATTCTTCATATGAAATGTATTATTTCCCATGTTCTTCTAAATAATTTCTCAAATTCTCCTGTGTATGTGTTGCCTCTAATTTATTATGTGCTATGCTGCTTTAGTAAAATGAATTGTGTTAATTCATGACTATCTTCAAATGCACTTCTGTCTCCCTCTTTCGAGAGAATATTTTTCTGAGTGCAATAATATAGTTGCTGGTGTTTTTCTCTCCAAGTTTTAAATATTTTTCCGTGCTCGCCTGGCTCTGGGATTACTGACCAGACACCAGGTAGTATTTTGTTGCTTGGGCCTTTTTATGTGATCTCCCATTGATTTTTTTTTAACAACATTCAGTATTAATTTTACTTTTCCAG
Seq C2 exon
TTTGACCCATTGATATTAAAGGACCACTAGCCAACTATTCATTCTTCCTCAAAGAGAAAATCAAAGAAGAGACACAGAAAGAAATGGCTAAATCTCCAGTAAACATGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931:ENSMUST00000088787:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types