MmuINT0026489 @ mm10
Intron Retention
Gene
ENSMUSG00000057093 | Zfp607b
Description
zinc finger protein 607B [Source:MGI Symbol;Acc:MGI:2148237]
Coordinates
chr7:27689340-27691295:+
Coord C1 exon
chr7:27689340-27689486
Coord A exon
chr7:27689487-27691214
Coord C2 exon
chr7:27691215-27691295
Length
1728 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TTCTATCTTTTGTTCTTGAGGGT
3' ss Score
-1.83
Exon sequences
Seq C1 exon
TGAAGCATTATATTTCTTGTAGTTTGGGACAAGGGGACTACATTTCCCAGGCAGCATAGGGTCGGAAGTAGATAACTTCTGGTGTGCAGGCGGAGCTACCCCGGATGGTCAGGTGGGAATCAGAAGTCACTGGTTGGCCTCCACAGA
Seq A exon
GTAAGGCGGGAGACCGCAGGCGGGTGTGGGTGTGGCGAATGGGTGTTGATGTGTGGGCGTGTAGGAACTGTGGTGTGTGTACGTGTGTGTATGTGCGTGTGTGTCTGTCAGTGTCTAACTGTATACACACCTTGAGCTCTCTGCATAATCTGTGTCTCTTTGCTTGTCGCTGTCTGCTCCTGCTTTCTCTCAGGGACACAGGGACTAAAGCAGAGGACCAAGCTTCAGTAAGGGGAGGTCAGGTGCGGGGTCTGAAGGGAAGCTTTCCCCGAGGCTCAGACTTGAGCTTAGGGCTATAATTTAAGGACGGGGGTGTCGTCTAGGAGGGAGGGTACTTGTTGAGCTCCGTGACTGTCTCAGAGCTCTGCCGAATCTGAATATCGAGGGAAGAGAAGGAAAGTTCTCACTGAGGATGCTCTCAAATGTAGTCTGCGATCTCATGTATACTCGGGTTCCCTGCTTAGGCCATTATTCAAGAGGGAGGCTGGAGAATAATGAAAATATTATCGCTACCCATCTAAGATTCAAGAGTGAGTGCTCTTTTCGGTTTGAGAACTGAGGTTTTAGTTTTAGAATATAGAATTGTTAGGAAATGAAGCAGGAGCATGCAAATTTACAACTGCACTATTGTCCTTAGTGTCCCCTCCCGTTCCAGCTAGTATTCACATTATCATTTCAGTGACCCTTGATGTCTTCTGTCGACAATCCCATCTTTTTCCCAAGCTGTTTTCCATAGGGACCTACAGAGGTTAGCATTAGGGCTTTCAAACGCTGCTGTTCTACATCTGATTTCTATTTCCATGGCATCACAAGACAGGAAAAGAATGCAGTCGATAGATGGTCTGTTCGCTTGTGAGGATTTCGGGAGTGGGAAAGTGATAGCACTGAAGGACTTCATCTAACTTATATTTTTGTCACGAGTACACTTGCCATCTACTCTCTAAGACTTTACAAACTATTAATCCCAGTCACCATGTTTCATGACACATCTCCCAACTCTCTCGCTTATGGTATAGATCTACCTCCCACTCTCGACCCCGATGCTGCACATCCAGCCTCCGCCACTCAAACCCCAGTAACCGGCATCTTACTGTTCCTAGGAGAAAACAGCTTCAGATTCTACATGACTGAGACCATGGGGGTCTGTCTTTTGTTTAAAGATGAAGTATTTGTCTTCAAAGTTATGTATGTTGGGTTATGTGTCCATGACCACAGGTGCCTCTGGAAACCAGAGCTATAGGCTTCCCTGCAGCTTGAGTTCCAGGCACTGTAGCTGTCAGGAGACTGAACTCGGTCCTCTGGAAAAGCCATAGTGGCTCTCAACCCCTGAGCCATCACCATCCCCCGTGCTTGCCTTCCTCTTTAGCGTATTGCATGTGTGCATCCATTTTGTAGTAAATGATTCACTGTGCGTGAGCCCCATCCTCCATGTGCTTGGTCCATTCGTCTGCTGGTGAGGTCGCGTATCACTGCTATGGAAATGATGCTGGAAGAGCGGTGGGAGTGTAAATGTCTCTTGCTGATGCTGATGTTATTTCCTTTTTTTGGTTTCCACTCCATAGTGGGATGGATGGATGGATCAGGTGGGAGTTCACTGTTTACAGTGACTGTATGAATTTACATTCCTTCCAGTAGTGTGAGTTTTCCTCCATGTGCTCCACGTTATATTTTCTTTCTGATACTAGATACTAATTTTAACAAGATGTATTTCTATCTTTTGTTCTTGAG
Seq C2 exon
GGTTGTGCCCACCAGACCTGTGCGCACCATGCATGTGCCTTGAGAGGCCTGAAGAGGGCGCCAACTCCCCTGAAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057093:ENSMUST00000120004:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAAGGGGACTACATTTCC
R:
CTCCAGCTTCAGGGGAGTTGG
Band lengths:
203-1931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types