MmuINT0026931 @ mm9
Intron Retention
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34951007-34951383:-
Coord C1 exon
chr17:34951267-34951383
Coord A exon
chr17:34951179-34951266
Coord C2 exon
chr17:34951007-34951178
Length
88 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
AGGCCTCTGCTCTCTTCTAGGAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGGCTTGGTGGGGTCCAATGAGACGGTGGCACTGACCGCCTTTGTGGTCATTGCCCTTCACCACGGGCTGAACGTCTTCCGGGAGGGGCATGCGAAGCAGCTGAAGAACAGAGTG
Seq A exon
GTAAGGAAGCCGTGCTCTGTTCTTCCTGCCTGGCCATCCTTGCCCCGGGAGCCCGGGCATGCAGGCTCAGGCCTCTGCTCTCTTCTAG
Seq C2 exon
GAAGCCTCCATCACCAAGGCAAACTCTTTCTTGGGGCAGAAGGCAAGTGCTGGGCTCCTGGGTGCCCATGCCGCCGCCATCACAGCCTATGCCCTTACGCTGACCAAGGCCTCGGAGGACCTGCGGAATGTTGCCCACAACAGCCTGATGGCCATGGCTGAGGAAACGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451-C4a:NM_011413:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGTCATTGCCCTTCACC
R:
TTGGTCAGCGTAAGGGCATAG
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: