MmuINT0026953 @ mm9
Intron Retention
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34877212-34877589:-
Coord C1 exon
chr17:34877474-34877589
Coord A exon
chr17:34877389-34877473
Coord C2 exon
chr17:34877212-34877388
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
3' ss Seq
TTTCTAACTGTCTCCTCCAGGCT
3' ss Score
9.56
Exon sequences
Seq C1 exon
GAGGAGAGATGGAGGAGGCAGAACTCACGTCCTGGCGCTTTGTATCATCTGCCTTCTCCTTGGATCTCAGCCGCACTAAGAGGCATCTTGTGCCTGGGGCCCACTTCCTGCTGCAG
Seq A exon
GTTCCTCTTGGAAGGGCAGGGCTGGAGGGGAGAGGGTGTGGGCCAAACAGTCTTGATGACACCTCTTTCTAACTGTCTCCTCCAG
Seq C2 exon
GCTCTGGTCCAAGAAATGTCAGGCTCTGAAGCCTCCAACGTTCCTGTTAAAGTCTCTGCCACATTGGTGTCAGGCTCTGACTCCCAAGTCCTTGACATTCAACAGAGCACCAATGGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACAGAACTTCGACTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-C4b:NM_009780:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACTAAGAGGCATCTTGT
R:
TGCTGACTTGGCCAATTCCAT
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: