MmuINT0026957 @ mm9
Intron Retention
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34874578-34875946:-
Coord C1 exon
chr17:34875788-34875946
Coord A exon
chr17:34874705-34875787
Coord C2 exon
chr17:34874578-34874704
Length
1083 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CTCTTGCCTTTTCCTGCTAGGTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
CTGCAATTGAAGGTGGATGGTGCCAAGGAGTATCGTAATGCGGACATGATGAAGCTCCGAATTCAAACTGACTCCAAAGCCCTGGTGGCACTGGGAGCTGTGGACATGGCTCTGTATGCTGTGGGTGGTCGGTCTCACAAACCCCTCGACATGAGCAAG
Seq A exon
GTTTGTCCAACCTTCTTCATGCATCCTTTATCCTCTTTCTCCTCCTCTTCTTCCTCCTCTCCTCCTCCTCCTCCTGTGCCTCTGCCTTGTCTTCCTCCTCCTTCTCCTTCTCCTTTTCCTCCTCCTCCTTCCCCTCTTCTTCCTTTTCCTCCTTCTCCTCCTCCTCCTCTTTCTCCTCCTCTTCCTTCTCCTCTCCTCCTCCTCCTCCTGTGCCTCTGCCTTGTCTTCCTCCTCCTTCTCCTCCTCCTTTTCCTTCTCCTCCTTCTCCTCCTCCTCAAACTTCTCCTCTTCCTCCTCCACTTTGTCCTCTTCATCCTCCTCCTTCTCCTCCTCCTTGTCCTCTTCATCCTCCTCCTTCTCCTCCTCCTTGTCCTCTTCCTCCTCCTCTTCCTTCTCCTTTTCTCCCTTCTCTTCTCCTCTTCCTTATTCTCTTCCTCCTCTTCCTCCTCCTCCTCCTTCCCCTCTTCCTCCTTTTCTTCCTCCTCCTCCTTCTTCTCTTCCTCCTCATCCTATTCCTCCTCCTCCTTTTTCTTTTCTTCCTCCTCCTCTTCCTTCCCCTCCTTTTCCTCCTCTTCCTCATTCTCCACCTCCTTTTCCTTCTCCTCCTCCTCTTCAAACTTCTCTTCCTTCTCCTCTTTCTCCTCTTCCTCCTCCTTTTTTTCCTCTTTCTCATCCTCCTCCTCTTCTTCCTCCTTCTCCTATTCTTCTTCCTTCTTCTATTCCTCCTCCTCCCTCTCTTCGTACTACTCCTTCTCCTCCTCCTCCCCCTTTTCTATCTCCTCCTCCTCTCCCTCTTCTTCCTCCTCTTCTTCCTCACTCCTCTCCTCTTCCCTCTCCTCCTCCTCCTCCTACCCCTCCTCTCCCTCTTCTTCCTCCTCCTCCTCCTATCTTAAGGTCTGGGGCTTAGTTCTTTAGTCTCAGTCCCTATAGGCTCTTCCCAGTCTTCCCTTGAATCCTAGATGTTCTTGGTCTCCCCACTCGCTTCTCTCATCTTTGAGCCATACCCTAATACCCTCAGCTGAGTGGCAGATCCTGCTCCTCAGTTGCTCACATCTCCCAGCATCTCTTGCCTTTTCCTGCTAG
Seq C2 exon
GTCTTTGAAGTAATCAACAGCTACAATGTTGGCTGTGGTCCTGGAGGTGGGGATGATGCCCTTCAGGTGTTCCAGGATGCTGGTCTGGCCTTTTCTGATGGTGATCGACTAACTCAAACCAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-C4b:NM_009780:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(28.6=75.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAATTGAAGGTGGATGGTG
R:
CCTCTCTGGTTTGAGTTAGTCGA
Band lengths:
286-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: