MmuINT0028479 @ mm9
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25789111-25789855:-
Coord C1 exon
chr2:25789740-25789855
Coord A exon
chr2:25789230-25789739
Coord C2 exon
chr2:25789111-25789229
Length
510 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTTGATCTGGTTTTCTTAGGTC
3' ss Score
8.47
Exon sequences
Seq C1 exon
AGTTGAATCACTGGAAGCTTTACCTATCCTGAGCCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCAGCAGCTTCCTCTTTGGCCTCTGTGGCTGAGTACACAG
Seq A exon
GTAACAGCCACACAACATCTTTAGGGTATATTGCCCACAGAGGCACTTGGGTATAGATAGCACTCTTTAAAATATATCTTTATTTTGGCCTAAAATGTTTTGTTTTATTTTTTTTTAATTCAATATATACTCAGTGTCAGAGCTATCTCTAACTGCTGGCTGTCCACAGCAGGGACACAGCAGAGACCCTGATCTTATCTCTATTTGTCCCGTGGGCAATAATAACTCCTTACTCTTTTGAGAGCAGAGATAAAGCAGGATCATACATCCTGGTCACTTTCCGGTTTCTGGGTTTGTAATTTGTATAGTAAAGAGACTCAGGTCAGAAAGTAGCAACAAGTACTTTAATTTTTTTTTTTTTAAATTCTTCTGAGTAGATTAGAAGAGGTCTTTATGGTCTGTTTTCAGAAATGCATAATTGTATTTTGTTTCTGAGAAAAGTGTTGCTCTTTTGTGTGTATTTGTGGCTTGTTGTTAATAATTTTGCAATTTTTGATCTGGTTTTCTTAG
Seq C2 exon
GTCCTAAACTCTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAATGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAGCCTCACAAGAATTCAATATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-Camsap1:NM_001115076:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAATCACTGGAAGCTTTACCT
R:
CCAATATTGAATTCTTGTGAGGCTCA
Band lengths:
233-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: