MmuINT0030494 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21797316-21798104:-
Coord C1 exon
chr9:21797982-21798104
Coord A exon
chr9:21797472-21797981
Coord C2 exon
chr9:21797316-21797471
Length
510 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
ACTGTCCCCCACCCTCAAAGCAG
3' ss Score
3.95
Exon sequences
Seq C1 exon
AACCAGCTGCAGTATCTGGAGGAGTCTGCGATCAGAGATCGCAAGAAGCGCGAGCATTACATAACTGACTGCAAGAAGCGGGCAGAAGAGAAGAAACTTCAGACAGAGCGTATGGAGCGCAAG
Seq A exon
GTGTGCACATCTAAGGGTGTAGGGCTTTGCCAGCTCAAACCAGAGGGTCCCAGCCCTCACCTGGTACACACATCCTGACCTAGAGACTTCCCAACCATGCCAGTTGTCCTAACCCCAACCCCTCCCTTACTCTGCCCCCATTTGACCCAATGATTCCTCTCACAATCTCACCTCAGCCTCTTTCCTGGGATAGGCCGTGGCCTCCAGATCTGCCCTGGACTATCTGACCCTATACTCATCCTTCCCATTTAATTTAGGCCCTTTTGTTCTACATCTGAGTGGGGGGTCTAGCCCATCCCCTCCGGAGACTACTCCCTTCTACCATCCTGCCTTCTTACCCTGGTTCTGAAACCACCTATCTGACTCCTACCTGGACGCCTGTATCTAGTCCCAAGCCTTTGTCCTGTTCCCCACCATCTAAGCTAAGCGAGCTCCTCTCCTGGCCTCTGCCCCAAGGCCTTATCTAGAGCTGATTTTGACGGTGCCCTTGACTGTCCCCCACCCTCAAAG
Seq C2 exon
CAGACCCACCGAGACCACGTATTGCTGCAGTCAGAAGATACAATACAGGACCACCAGCGCCACAGGGAGGAGGAGCTGAGGCAGCGCTGGAGCATGTACCAGATGGAAGTGATGTTTGGCAAGGTCAAGGATGCCACTGGAGTAGCTGAATCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_001163787:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.536
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(36.0=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(45.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTATCTGGAGGAGTCTGC
R:
GCGATTCAGCTACTCCAGTGG
Band lengths:
270-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: