MmuINT0034152 @ mm9
Intron Retention
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:136980956-136984469:-
Coord C1 exon
chr4:136984384-136984469
Coord A exon
chr4:136981054-136984383
Coord C2 exon
chr4:136980956-136981053
Length
3330 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTCCTTCTTGGCCACCAGGTC
3' ss Score
9.86
Exon sequences
Seq C1 exon
CCTCAGGCTGTGGACAGCCTTCCCACAACCCCTCCAGCCGAGTTGTCAATGGCGAGGAAGCTGTTCCCCACAGCTGGCCCTGGCAG
Seq A exon
GTAAGAGTGACAGCAGCTGCCCCCACCACCACTCCCCACGCCTGCTTCTACTATGGGCACTGAACCCCAGGTCTGGTGACATGGCAGCCTGCCTTGACCCCACCAGTTCCTCTCCACTCCCTTCTTTGACTTCAAAAGGCCGGAAACTCTTGGAGAGAGATATTTCTTGGAGGTTGTAACTGTTCCATCTGCAATCTCGGCTGGGATTTGAAAGTGGAATTTGGGGAAAGGGTGGTGCTTAAGAGATTGGCTTAATAGCAGTGGAACTTCGGGGGCTGTGTTTAGAGGAAAGATTTTGTTTCTAATCTCCCTGGGTTCTACAAAAGGGTCAAAGTTCTGGGAGCTTAAAAGGGTTAGGAACTTCATAGAGGTTCATGGGGAGATGTTCATAGGGCTAAACTCCCTGTCTAACAATAGTCACAAGCCACGTGTGACTATAGTTTACTATAAAGTAAGGCAGACATAGTTGTTCCATACAAACTTGTAACCCAGTAGAGGCAGAAGGATCAGGAGTTCAAGATCAGCCTCAGCTACACAGCAAGTTTGATGTCACTCTGACTTCTAAGAGACCCTGTCTCAAGAACCAAACCCAGACCTGGAGAGAGCTGAGTGGTGAAGAGTGCTTGCTGATCTTCCAGAGGACCTGAGTTCAGTTCCTAGTCTGGCAGCTTAAGACCGCCTGTAATAGCATCCCTAGGGGACCCATGCCTTCTAGTCTCTGAGGGGGCCAGAACACATGTGACACACACCTGTTCAGAGAAACACACATGCACACAAGGAAACATTCTTTATAGCCTGCCTGTCTCTCCTCCTGAGTGCTAGGATTAAAGACAGCGTGCAACCACTGCCTGGCACATAAACATCTTTCAAAATCCACAAAATTGGTACAAATTAGGCAACTGAAAAAACTCATGTCAGTGTTCAACAGCCACAGGAAGCTGAGACCAATGAAGAAGATAGGAGGCATTTGCATCATCAAAGACCCTGAGAACAGACAGGGTCCCAGCTTATTCTGTGAGGGACCAGAGCCTATATCCTGTAGCCTTTGCTGGCCACACACTGGTGATGGCAGTGAGTTACTGTGGCCATCAGAGTGTAAAAAAATGACACAGATCAGAAGGATCTCCAGGCTTGGAGCCAGCCTGGTCTATAGAGTGAGTCCCAGGATAGCCTGGGCTACACAGAGAAATTCTGTCTTGAAAAACAAAAACAAAGCAAACAACACAGCCAGCACACACGTGGCAGGAGTGAGGAGGACACAGGAGTCTTCGAGTGTCAATCAGGACCTAAGCACAGCGGGCGATGGTCTTCGTCCATTTTTGGTTGAGGAGGTTGTGTTGCTCTTTGGCTTTGAGATGGGGTTTCAGGTAGCTCAGGCTATCCTCAAAGTCAATACACAGCTGAGGGTGTTCCTGACCTCCTGTTCCTGTTTCCACCTCCTGAGTGGTGGGGTTCTGGGCATGTGTCACCACACCCTACTTCTGCAGGGCTGGGCATAGAACTCAGAGCTTTACGCATGCTAGGCAGGCACTCTACCCACTGAGCTACATCGCCTGCCCCACTCTCTTTTTTTTAGTAAAGATTTATTTTTTAACATGTATTTATTTATTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCACAAGAGGGCATCAGATGTCATTATGGATGGTTTGAGCCATCATGTGGTTGCTGGGATTTGAACTCATGACTTTCAGAATAGCAGTCAGGGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGATTTATTTATTATTATATGTGAGTACCCTGTAGGTGTCTACAGACACACCAAGTAGAGGCCATCAGATCTCATTCCGGTTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTTGGAAGAGCAGTCATTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGCCCCACCTTATTTTTTTAAAGATTTATTTATTTATTATATATATATATATTCGTGCACTGTAGATGTTTACAGACATAGCCGAACAGGGCATCAGATCCCGTTATAGATGGTCGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTAGGAAGAGCAGTCAGTGCTCTTAGCTACTGAGTCATCTCTCCAGCCACATTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGTATAGTCCTGGTACTCACTTCGTACACCAGTCTGGCCTCGAACTCAGAAATCAGTCTGCCTCTGCCTCTCCAGTGCTGGGATTAAAGGAGTGGGCCACCATGCCCGGCCCCACCCTCTTTTATGTATTCTTTAAAAAAATTTTTTTTTGAAACAAGGTTTCTTTGTGTAGCACTCTTTGTTCTGGAACTTGCTCTGTATATCAGGTTGGCCTCTGACTCAAAGAACTGCCTGCCTCTGCCTCCAAAGTGCTGGAATCAAAGGTGTGTGCAACCACTGCCAAACTGTACCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTTCTTCCTTCATTTTTCTTCCTTCCTTTCTTTCTTTTTTGTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTTCCCTCCTTTTTCCCTTTCTTCCTTCCCTACTTTCTCCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTTGAGACAGTCTCACATAACCTTAGCTGATCTTGAACCACAGCCCTTCTGCCTACTTCTCTGATGCTGGAATCCCAGGTATAGAGCACCGTACACAGTTGTAAGAGAGCTTTTGAAAGTCAGAATGCATAGGGAAGGGGAGGCAGAGGCCTCAGTGTGAGGCATGTTTCAACAGACCCAAGAGGCCTTGAAAGATGTAGGGTTCAGGAGAATGCAAGGACTGATAGGACAGGGGTTATGAAGAGCCCTCAGGAAACATAAAGTCTGTGGATGCCAGAGAGTGGTAAGGACCTCAGAGACAGCCTAAAACCTGTGGTGGGAGGCCTTGGATAATCAAAATGTGATGCTTGTGGGAAAGTGACAGAGTCCCCTGAGGAGCTGCATAGTCTGTGCACTGCACATTTCAGAAGGCGTCATTTTTTTCCCGTGCGAATAGCATATTCTGGAGCTGTAAAGCACATAGCCTGTGAAGCCACTGGTGGCAACCCATGGTGTTTGGTCTGGGCTACTCAAGTGCTTTCCTTCTTGGCCACCAG
Seq C2 exon
GTCTCCCTTCAGTATGAGAAGGATGGGAGCTTCCACCATACCTGTGGTGGCTCCCTCATTACCCCTGACTGGGTTCTGACTGCGGGCCACTGCATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-Cela3b:NM_026419:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=48.3)
A:
NA
C2:
PF0008921=Trypsin=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: