MmuINT0037125 @ mm9
Intron Retention
Gene
ENSMUSG00000030158 | Clec12b
Description
C-type lectin domain family 12, member B [Source:MGI Symbol;Acc:MGI:1918433]
Coordinates
chr6:129325533-129329656:-
Coord C1 exon
chr6:129329541-129329656
Coord A exon
chr6:129326364-129329540
Coord C2 exon
chr6:129325533-129326363
Length
3177 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TTAAATCGATTACTTTTCAGGCT
3' ss Score
5.65
Exon sequences
Seq C1 exon
GATCTCCTTCAGTCACAGCTGTCCCTCACATTTTCTTTCTTTTGGCTGGGATTGTCCTGGAACTCATCTGGCAGAAACTGGCTGTGGGAGGATGGTTCATTCCCCCCTCCAACCCT
Seq A exon
GTGAGTATCTAACTGTTGGGCGTGGAAGATCAGGATTCCCATAGAATTCTGAGAAAATTGATGAAAATTGAAATCATTATAAACCTAGATACGAACAAAAGAACCATATTGTATAACAAAAGAGAGAGTTTCCGTAAGGAATACATTGAGGGCTGGTGACTAATTCCATCTATATTGTCAAATGCAGAGCAATGCACTAAACCTCATGTGTCTCTTGGTTGTTTTTCTTATTAAGCATGTACCTGTAACAGTATGTTCAAAGTACTTCGTAAATATAAATCCTTGAAGGATGTACTTTTCTATCCCCACTACATAATAAAAATATTATCAGAGAGCTTCAGTGACTTGTCTAAGATTGTCCAGCTCAAATGTAATCAAATCAAGACTGAACACTTTAGGTCACTTATTCAGACACTCTGCCATTTCATTTTCCAGCCTTTCCAACCTTCAAGGATGTCATAAGAACATACATTCAGATGTCGACATATTTACTCATATTAAGTAATGTTGACTGTTTTCCCACAGAACGTAAGGCTGAGCTGCCTAATTAGATTACAGATTAGCTTCATGATGCAGACCCACCAATTACATTACATGGTAAATACCATAAGCAAATCTACTGCTGCAGAGTCTTGATAACAGTGTTGAAATCTGTATGATTTGGGAAGTCAAAGCTTTGCAGCTACTTAAAGTTTTTAACAAAATAGAAATCAACACAAAAAAAAATGTGTCTTTCAAAGCCTTCCCCCATCCCATCTTCTGCACTTTTCAAAAGACTCCTTAGGGAGAGGTCCAGACTCACTGGGAACCAGAAGCCCCAGTGCCTCTCGGAGTCAGGCTGGGCTCAAAGAGGAAGCCAGTGGATATGTGGTGTGGGTTGGGAGTTGAAAACTAGTGTTTATTTCATCTACAAGATGGTACCATGGTCTAAGTCCTTATTTTCTCAAGAACAAGATTTGTTTTAACTGTCATGTTTAAATTTTTTTATTTGTTTATTTGTTGGGATGAGGTCAGGGTTATATGGTGCCAAAGCACACATGGGGAAGTCAGAGAACAACCTGCAGGAATAAGTTCTCTACCTTCAGCATGAGGGTTCAGAGAACTGAACTCAGGTCACCAGGCTTGGCTGCAAAAAACCTTACCTACTGAATCATATCAGGAGCATTTTTGTTTTATTATAAAACTAAAGACTGGAAAGATTGCTCAGTGGTTAAGAGCACTAGCTAACAAGAGGACCTGATTTCAGATCCCATCACCACAAGTGACTTACAACCACTTATAGCTCCAGGTCCAGGAGATTTAGCCCCCTCGGCTGACTTCTGTGGACACACGCACACATGTATGTACAGACATACAGACATACACATATATAAAAATAAAGTTAATCCTTTTAAAAATAAAAGTTTAAAAGAAGACATAGTTCAAAAATTCTTTGAAAGATTTTTAAACAAACATTCCACATCAGAACTTTAGTGAAACAGAATAAGTGTATTTATAGTTTTTAAAGTTATTAACATTTAAACTAAATGAGAATTGGTACCACTGGTATCTCTCCTCTCCCTCCTCCTCTTCTTCCTGCTCCTCCTCCTCCTCCTCCTCTTCTTCCCCTCTCCTCCAAGTGTTCAAGCCATCCAACTCTGTTTTACTCTTTAATGTTAGTTGTCAACATTATCTAAATTAAACTATAATCACTTTATGTCTGCTCAAAGCTGCTGGTATTCAGCTTTGGTGTACCAAATAATGATATGTCTATTCTTTTCTCCCTAAAAATCCATTTCCCAGAGATTTTTCTGAGACTTTTCCTGTTCAAATATGTATCTCCCAGGCTCTTATCACCATTGCTTCACATGTTTGGTTAGTGTTTAGTCTAGTTTCACACTAGTAATAATGGCAGAAGCCTCACTCAAAACAATATGGATGTAAAGGAGAGTTGTTCTTTTAAAAGCAGAATAACTGGCTGGGTAGTACTCACAATTGACTGGAGGAGAGGAGGCCATTAGACAGAGACCTTCCAGGAGTGGGACCACAGCACCATGTAAAAACAGCACAGTTCTTGGGTTAGAACATACATTTCTCCTCTCCGATATGAATACTGTTCATTCTTGACTCATCTACTGGCTCCCATGAACATGTGAAGGAAATGACCTATAGTGGGGATGCAGCACCTGTGGAAAATGACCCTAGGTCATCACGCAGCTTTCACATAACCCAGCTCTCTATACTCAGCTTAGAGAGACTACATCAGGTTTATGCAGCCACTTCTGTGGGTCCTGAATAAGGTCTCTATTTCCAAGATATATTCAAATAGTGATGTTTAATAGGCTCATCTCTGGTGAATAAAGTAACATGGCATCACCATGTGCATCACTTGAAAAAAAGCTGTACTTGTAACAAAGATTTAAACTGAGCTTGCATAATTTTCAAAGACATCATTTAAGGATCATTAAAGTTGAGCCAAAAACCTGGACACAATTTCCCAACTACCTGATCACATCAGTAAATCATTCATTTCCTGTCTCAGACACTTATCTTGTCTCAAGAATGTATGAAAGCAAGCATAATTACACATTACATAGTAAAATTCCACAACTTTTTTACATAGTTTGACTTTATTTTTCTTGTTTTATTAAAATAGGAAATATAAAAATAATCTATAAGTTCTAATGTAATTTGCACTGGGTAAATTGAATTCCATATTACTGGTGGGAATAATAATTCCCAAGACATAACTTAAATATTCTTTTTATTTAATTGGATTTATCTTATCATAGCTTCCAATCCCCCATCTCCTACCAGATCCCCCCCCAACCATCCAATTCTATCCTTTCTTTCTCTCTCTTTAGAATGCAAACAGGCCAATAAAAAAATGTGAGCTGTGTCAGGCCTAGGCTCCCTCTCATGGAGTCAGCTGTAAATCCATTCAAATAGTGGTTGGTTACTCCCACAACTTCTGTGCCACTATTGCATCAGCATGTCATGCAGGGTTAAATGAACTCTTCTTAAGGGAATGTTTTAGCCTGAGACAAAGAACACAGGTGCTGGCACTACGGCTCCTGCTGCTTTGTAGAGGATGCATGAGAGTCGGATTTTTCCCTCTAAAGGTGACTGAGAAGACTAGATCCTAGTTAAATTTCATATATAATAGTTTTAACTAATTTTAAATCGATTACTTTTCAG
Seq C2 exon
GCTTAGTGACAAGGAGCTTGCGAGTTTCAATGGATCCAGAGAGTGTGCTTATTTTGAAAGAGGGAATATTTACACTTCTCGCTGTCGTGCTGAAATCCCTTGGATTTGTGAGAAGAGAGCCTCCCTGGTGAAGATTGAAGATTTGGATTAATCTGACTCTTCCAGATCTATCCAGAAGTAAAGACCTATTGCAAACCCATGCAAGAAAGAAGAAAGCTACAATATTTGAGTCAACTAAAAATTGACTGTGTACTTAAAACTATTGCACGGACAAACCTGCTTCTCAGAACGTTCTCCTCTTCACGTCTGATTCCCTCTGACCTGTTCTGATTACTTAGATCTTAAAATGATGTCAAGTGCCCAGGAAAGTACGTGTCTTCTCAGTCTGTCTGTCAATAAACATTGTTTCTTGCTTTATTCTTACATGTCTACATGGATACTGGGTGATATTTAAATATTTACCACGAGACCAACACAGGCCACAGTTTGGGAGCAAGTTCTAGGAGACCCCTGCTATAAAACCTGCTCAATCATGTACAGGTCTGAGGGAGCCCAAGGTAAAACAACAGTGCTGTGTTGTTGAATTGAAAATATTTTAGTGTTTTAGAGATCATCTGTCTAAACCCCTAGGTATCAGCCTCCATGTACAGAGTAAATTTTCTCTGTCTACCTATGAAACTATGTACTATAAACTCTTATAACTTATAGCCTACATACAATAGAATGAACACTGGTCTTCATATTTTATCATTTATTTAAACTAATAACATCCAGGTTATTGATTTGGCAATCTGGGTATTATCAGAATAATAAAGATTTTTATTCTATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030158-Clec12b:NM_027709:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(36.2=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: