MmuINT0041414 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:121973045-121973491:+
Coord C1 exon
chr6:121973045-121973065
Coord A exon
chr6:121973066-121973322
Coord C2 exon
chr6:121973323-121973491
Length
257 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTTACAACCTCTTTTACAGGAT
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTTCCTCTGGCTTACATTGAG
Seq A exon
GTAAGAAACTTAAGTGTTTTGTAATCAAAGAGAACTCAATATTATGAAATTAACCTGACATTGGAAAGTCTAACTGCTATGGGTCGGCAGCCCACCCCATTCGAGATAACTGGCTTGTTATTTCCCACTTCACCTTTATTCCTTCCCTCCACAAAAGAATGTTACAAAGTTTCAAAATGCTTCCATCAACAGCAACCTACATGCATTGTTGTTCTTAATACTTTATTGACTTAGAAAATTTACAACCTCTTTTACAG
Seq C2 exon
GATCCGAAAAAGAACCGAATTATGCAGTGGAGGGATATTAAGACTGAGAATGGGCTTAAGCAAATGTCCTTCAGCCTGGCAGCAGAGCCCATTCAGGGCCCCTACAAGATAGTGGTGCACAAACAGTCAGGGGTGAAGGAAGAACACTCCTTTACTGTGATGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: