MmuINT0041983 @ mm9
Intron Retention
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196983331-196984330:-
Coord C1 exon
chr1:196984254-196984330
Coord A exon
chr1:196983739-196984253
Coord C2 exon
chr1:196983331-196983738
Length
515 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTATCTTTCATATCCCTAGAAA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTTCCAGTTAAGTGAGAGTGCTTATCAACTGTGTCAAGGTACAATTCCTTGGTTTATAGAAATCCGTCTTTGTAAAG
Seq A exon
GTGAGTAACAAAATTGACAGAGGATTTTAAGTGATATAAGATTGATAAGTTTCCAATGTTAGGCCTATGCTATGGGAATTACTACATTATTTTGTCAAGATTTATATTATCTATGTTGCCACCTTTCTTTTGTCACCTCTTTCTCTAATCAGTCAAATACCATGTACTTAGTACCTAGTTTATGTTGTGGTTTAGGATGTTCGTAACATAGAGAGATCACTCTATTGGAGCCAAAATTCCTACTTTGGGTTGCGTCAAAGTTTAGTGAAGAGATAGGAGATTGGTGTCAAATATGAACTTAGATTCTGTTCCTGCTGTCTAATACTTGTATAACCTTTGGCAACATATATAACTTTAATTTAAATTTTGCTTACAGTGAAATTTGCTTAAATCAAAATTTATATACACAATAAGGTTTAATCACAGCATGAGCACACCATTCACAAATAACATGGTGAGAAATGCTGCACTTCAAACCCTTGGTCAGATGTCTACAGTATCTTTCATATCCCTAG
Seq C2 exon
AAATCACCTGCCCACCACCTCCTGTTATACACAACGGGACACATACATGGAGTTCCTCAGAAGATGTCCCATATGGAACTGTGGTCACATACATGTGCTATCCTGGGCCAGAGGAAGGCGTAAAATTCAAACTCATCGGGGAGCAAACCATCCACTGTACAAGTGACAGCAGAGGAAGAGGCTCCTGGAGTAGCCCTGCTCCTCTCTGTAAACTTTCCCTCCCAGCTGTCCAGTGCACAGACGTTCATGTTGAAAATGGAGTCAAGCTCACTGACAATAAAGCCCCATATTTCTACAATGATAGTGTGATGTTCAAGTGTGATGATGGATATATTTTGAGTGGAAGCAGTCAGATCCGGTGTAAAGCCAATAATACCTGGGATCCTGAAAAACCACTTTGTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-Cr2:NM_007758:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.2=88.9)
A:
NA
C2:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=41.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTTATCAACTGTGTCAAGGT
R:
TGGGGCTTTATTGTCAGTGAGC
Band lengths:
348-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: