MmuINT0042044 @ mm10
Intron Retention
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37787659-37791000:+
Coord C1 exon
chr2:37787659-37787772
Coord A exon
chr2:37787773-37790127
Coord C2 exon
chr2:37790128-37791000
Length
2355 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TTGGCTGATCGCCCCTTTAGGCC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GGAATGACTGCAGCATGGATGTGGATGAGTGTGCCTCAGGGCCGTGCCTCAATGGAGGTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCTACTGCCAGGATGGATACACAG
Seq A exon
GTGCTTGGCTGGGGTGGCTCTGGCATGGAGGTGATATGGTTCCTTTTGGCTGAATGTGGATTGATGCATACTGGAAATGAGGCTAAAGGTGGCCATGGTGGCACAGGTGACAGCTGAGGTGGGGGTGCTGAGCCAGAACTCCAACTTTGTGAAAGGGGAGAAACTGGTCAGTTTGAGTACAGTCAGGAGGAAAGGGTGGAGTGGGTGGTACCAAGGCTGCCAGGTGACCCTCTGCCTTGGAGAATGTTGGCTGGTGACTTCAGCCCTGTAAGTACTGTCTGTGAAGCCAGGACCATCTGGGGGTGAGGGTGGGGGGACAAGGGACTAACCCCAAGAGAGGGGCCTGGACTGGAGTCAGAACTGGGGCTCATTTATGGATGTATGGTGGTCGGGGCCCTGAACTCCGCTATCAAATCAAAGAGGGACAGAGCCTTAGTTCAAGACAGAAGGAGGCAGCACTGGGTGCAGGCACATGCCTTCAGAAGGACACACTTTGGCTCTAGGGGGCTGTGTCTGTTGTCAGTGGCTGGAGTGTGAAAGTTCTCCTGGCAAAAAGGCCCGGGAACTGCACACAGATTTTCCCTCTCTAGTGTCCCTGCCCCCACTGGAATGTGGGTGGCACTCCCCCACACGTAGCATTCCTGCCTAGCTCTTTTCCCTGCAGGTGTCTGGAGGCATTTTCCTTTGCTTGGGGAAGGGACTGGAGATACATTCCCTCTCTCCTGTCTTGGACACTCAAACATATTGGGGCTCACTGCCTCCCCCTGCCCATGTTGGGTGGCCCATGCCCTCTGCACTGTTCCTATTGCTTGAGCCCCTCCCTTCCATATCCTCCTGCAATGGCCCACTCCTCCATAGTCTCACAAGGGTTACCACGCCCATCTCATGGACATGGCAGTGAAGCCTGGAGGGGGCGTCATAAACAGTGTCTATGGGAACCTGGATCCTTCCAATTAAACAGTGAGTGACAGGGAGGGGGAGCTCTGAGTTCAGAGTCCTGGGGGAGCGATCCTAGCTGTGAGGCTGGGCTCTCTGCCCAGCCTCCTTTGAGACACCAGAAGGCTCTGGACTGGAAGGTCAGCCTGGAATTCCTGAGTTGGCTCAGAAGAACTCAGGCAGGCCAGACTGGGAGCCCTGTTCCTAAGCCTTGGTGCCTCTGTAGGTGACGATGGGACTGTGGGTGCTGGGCCCTTTTCTGGGGAGCCTGTGGCTCTTGGCAGGTAGGAGGACTGGGGTGTCTTGAAGGAAGAATTTACAGCGGGTGCCTGGTGATTGTGAGGAGGATGGTATAGGTGTGTGGGCTGATCTATTCTCACGGACCCCTCCTGGCCTGGGTCTGTACGGTTGAGGTGTGGGGTGAGAATGGCCTCTGGTTGTGTTGTGGAGGATCTGGCTGAACTGTGGTTGCTCTTTGGCCTCTTGACTGTGAAAGGGAAGATGGGCTGGCACCTTCCCAGGCAGCGTCCTTGGGCACACCCCAGGGTAGAGGGACGGAGGAGTGAGCCCTGGGGTGCTCAGTGTGTTCCAGGTGTATTGCCATGGCTGTCCCATATCTACAAAGGCTCTGCCAAGCCCTTTCACTGGGCACCAAGGACAGATTCAGGCTCCAGAGGGAAACTAGGGTTCTGGGGAGCCCTGTTTGAGCAATGGTGGGATTGGGTCTTTGAGCTGATCTGGCAGCCATCGGGGCACCTACCTTTAGAAGTTCCTCTCCACCTGTCTCCAGAGTAATCAGAGGTCTCTTCCCAAGGTGTCATTGGGCTGTGCTCCTTTGCTGCACATGACCCAGCCACTCACCTGCAAACCTTCTCTGTGAGGGCAAGCTTGAACCCTCTGTGGGCTCTGAATGACCAGGAGGAGTTTGAAAATAGTAAGGGAAGTCGAGGCATGACTTTCCAGGAAATACTTAGAATAAGAGCAAGTTCAAGGCTTTCAGGCTGAGGCTTGAGAGCCTGGTAGGCCTAGACTATGACAGTCTCGAATACCAAGGTGAGTGGCTGGGTCATATGCAGCAAAGGTGTATAGCCAGGTGACACCTTGGGAAGAGACTTCTGGTTACTCTGGAGATGGGTGTGGAGAAACTTCTGAAGGCAGCTGACCTGGAGGCTGCCAGGTTTATCAGAGCAAGAAGCATGGGGTGGAAGAAGAGGTGGAACCAGGGAGTACCTTCCCAAGTCAGGCCCACAGGGCATGGAGACTTATCAGACATGGCCAGGGAAGGGAACCCAGGGTGGGGGTGGGGCGGGCACCTGGTGTGTAGGTGCCGAGGTCAGCACCACCATGAGGCATGTGAGCTCTGGTTGGAGATTCTGGCTCGGGCTTGATGTGCTGACCCTTGGCTGATCGCCCCTTTAG
Seq C2 exon
GCCTGACATGTCAGGAAGATATGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTGAGGCCTGGGGTGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCCATACCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAAGTCTGGCCTCCACGGTTACTTCTGCCGCTGCCCACCGGGGACCTATGGGCCTTTCTGTGGCCAGAATACGACCTTCTCGGTTGTGTCTGGGAGTTCTGTGTGGGGATTGGTGCCAGCTGCTGCCTCCCTGGGTCTGGCACTGAGATTTCGTACCACCCTGCTTGCCGGAACCCTGGCTACTCTCAAAGACACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATCCTTACACTGCCTGACCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGAGCTGCGGCTCTGGCACGAGGGCTGCCCTGGCCAGCTCTGTGTGGCCTCTGGTCCGGTGGCTACAGGCCCTACAGCCTCGGTGGCCTCTGGGCCTCCGGGATCCTACTCCATCTATCTGGGCGGCGGGGTCTTTGCCGGCTGCTTCCAGGATGTGCGTGTGGAAGGGCACCTTCTGCTGCCTGAGGAGCTCAAGGGAACTGTGCTTCTGGGTTGTGAGCGCAGGGAACCTTGCCAGCCTCTGCCTTGTGCCCATGGAGGGGCCTGCGTGGACCTGTGGACTCACTTCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403:ENSMUST00000050372:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.8=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
NA
C2:
PF0000822=EGF=PD(6.5=0.7),PF0000822=EGF=WD(100=10.6),PF0221019=Laminin_G_2=WD(100=42.5),PF0000822=EGF=WD(100=10.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types