MmuINT0043663 @ mm9
Intron Retention
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141397412-141399711:-
Coord C1 exon
chr4:141399586-141399711
Coord A exon
chr4:141397549-141399585
Coord C2 exon
chr4:141397412-141397548
Length
2037 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
CTGTCCACTTTGCATTCTAGGAA
3' ss Score
9.99
Exon sequences
Seq C1 exon
CACAAACTTGACCTACCGCGTGGGCCTGGGGAAGTATAACCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCGGAGGTGGATACCATCTACGTCCATGAGAAGTGGAACCGTCTTCTGCTGTG
Seq A exon
GTGAGAGCCAGCCCTGGTGCAGCACGGGAGAAGGGTCCCCAAGATGGAGCCACAGAGTCTGGCCCCAGCTCTCGGCATGCCCAGCTGGCAGGAATACAGGATGGCACTCACTCAGACCTTCACACTGACCAAGGATATGGGTGAAGTACACGGGAATCTCTATCCCTGAGGCTCCCACCATGCTGTCCAGAATTCACTCAGCCAGAGGCTGAGCCAAGAGTCACCTATACGGAGTGCTGAGCGCCTGCCCAGATTGCAACAGGCATGTGAGACGCCATCTCTCCTCTAAGTCTCACAACAACCCTAGACAGGGAACTAAAGCTAAGAGAAGTTAAGAAATACACTCCAGCCTGGCAGTGGTGGAGTTGGTGGCATACGCCTTTAATCCCAGCACCTGGGAGGTAGAGGCCTTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGGGAAACCCTGTCGTAGGGTGGGGGAGAAGGAGGAGGAGGAGGAGGAGAAGAGGAGAGAGGAAGGAGAGAGAGAGAGAATCCATGTGGAGCTTGCTGGCACATGCCTTTAATCCCCTTTAAGGCTGGAGGATCTCTGTAAGTTCAAGGCCAGCAGTTTGGTCTGCATGAGTTCCAGGACAGTCAGAGCTATGTAAAGAGACTCTGTCTCTGCCTGGAAAGATGACTCAGTGGTTAAGAACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGGTGCCTTCTGGTGTGTACATCCAGTGTACTCACATACATGAAATACATAAATCTTGAGAGAGAGAGAGAAAAAGAGAGAGAGAGAGATACTGTCTCAAAACAAACAACGCAACAGCCAGATGGTAGGGGTGGTGCACATCTTTAAGCCCAGGACTCAGGAAGCAGAGGCAAGCAGATCTGAGTTCAAGGTCAGAACAGCTAAGACTATCCAAAAACAAACCCCTATCTCAAAAAACTAAAGCTAAAGAGAGAGAGACAGAGAAAGACACAGAGACAGAGAGACAGAAATGTGGTCCACGTCACCACCGGATCACCAATTGTCTCTCTCTCTGGCAGCAGAGAGTAGTTAAATGAACCTGCACAGGCCTTTGTGATCATACTGGGCCGGCTGCAGCTCCTTCCCAGGCCCTTTACAGTGGTCCTGAAGAGCTCACTCTGTTGAGCTCTCATGAACTGGCATAGGGGGAAGAAGTCACATCTTAGGGGACAGATGCACCTACTGGAAGGTCGCTTAGGGCTGGAAAGGTGGCTGCATGGTTAAGAGCACTTGCTGTGTGTCTTAGGGTTTCTGCGGTGGTGGTAAATATGCCGAAAGCAACTTGGCAAGAAAAGGATTTATCTTTTGTTTTTGATTGTCAAAACCTGCCTCTGCTTCCAGAGTGCTGTGATTAAAGGCGTCTGCCATCACTACTCGGCAAGGTTTGTTTTATCGTAGACTTCCAGGTGACAGCCCAGCACTGAGGAAACTGGAACAAGAGCTCGAGCAGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGATGCTGCTTACTGGCTTGCTCCCCACGGCTTACTCACCAGGACCACCAGCCCATCAATCAGACATAGACAGCACACTGTGCAAGCCGGGGGACCCCAGTTCAGATCCCAGCACTCACATGAGAAGCTGTGTGTGGTAACCCCAGTGCTGTGGGAAGGGGAGACTTAAGGATTGCTAGGGATTGCCGGCTGCCAGCCTCAGTCTGGTGAGAGATACTGTCCAGGGAATACCGTGGTGAGGGTTAGACCAGGACATCTGATGTCTTCTGGCCTCTGCACACACACACACACACACACACACACACACACACACACACACACGAGCCATTTGTCATCCAGAGTCCCTCCTGCCCCCAGCTTTGTTACCTAGCTGCTAGCAGATCCCTAGCCACCAAAGCTCGACACCCAGCACTGCCTTCTGTCCACTTTGCATTCTAG
Seq C2 exon
GAACGACATCGCCATCATCAAGTTGGCTGAGCCTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-Ctrc:NM_001033875:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: