MmuINT0044973 @ mm9
Intron Retention
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82204728-82206471:-
Coord C1 exon
chr15:82206223-82206471
Coord A exon
chr15:82204900-82206222
Coord C2 exon
chr15:82204728-82204899
Length
1323 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGCATTCTCCTTGCCTACAGCTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTAGCTGGAGTTAGGATTGAGAAGTGTTTCCAAAGAAACCCAAAGAGCAGCCGGGCAGCCATGAGACTGCCGACCGGGGCTGAACTGTGGCCCATAGCCATATTCACGGTCATCTTCCTGATTCTGGTGAACCTGATGCACTGGCGCCAGCGCTGGACTGCCCACTACCCTCCAGGCCCTATGCCGTGGCCTGTGCTTGGGAACCTGCTGCACATGGACTTCCAGAATATGCCAGCAGGCTTCCAAAAG
Seq A exon
GTAAGGGAATTTTTGGAGGGCAGGAGAAGCCATGGTGACCACAAGTGGGTGGTGGTAAAACTGCATGCGGGACAGGGAGCTGCCCCCCCCCCCCCAGAACGCAGGTTAAGAGGCTCCCCCGTGAGGAGAGTGGTGCAGGACCCAAGGTCATGCTGGATTTTCCAAAGGCAACAGCTAGGAGGCGGGATGGATCCTAGCAGCCAGTTTGAGATGCAGTTAACAGGATGGTAGCGGTAGTGCTGGGGTTGCTTTCCGATTCCAGCATGCCTGTAATTGGGAGGCTAAAGCAGCTGGGTTATAAATTCCATCTTAAACCATCTCTAAACCAAAGACTTCAAGGCCAGCTGTGAAGGTGTGTGCCTCTAACCCCAGCACTTAAGAGGCAGAGGCGGGCATATTTCTTTGAGCTCTAGACCAGTCTCATCTAACATACTGAGTTCCAGGACAGCCCACGCTACACAGTGAAACTGTTTCAAAAAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAGAAATCTAACATTTTAAAAGGAAAAAGCCCAATGCAGTCGTGGAGACCTTTAATCCCAGCATTCAGAGGAGGCAAAAGCCAGCAGATCTCTGTGAATTCAGCACCAGCTTGATCTACGTAGAAAATTCCAAGCCAGCCCTGGCTACATGCTAAGACAAAAATTATACACACACACACACACACAAAGGGAAATCAAGTCATATAGGCTTCCTGTTCCTTTTCATTCCACCAGAAGGAAATGTTTTAAGAATGTGGAAGGGGGCACTGGAAAGATGGCCCAGAGGTTAAGCACTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCATAACCATCTGCAATGGAATTCAATTCCCTCTTCTGATGTGTCTGGAGATAGCACCAATGTATTCATATACATTAAGTCTTTTTATAAAAAAAAAAAAAAAGGGGGGGTGGAGAGGCCATGATCCTAAACAGGTGTTTCTGTCAGGAAATCAAAGCTGAGAGATGGGAAATGCCGGCCTCCATCCTTTTGCTGTTTCAGATTCTCAGACTCCCTTACATCTGTGAGCCTTAGTTTCTTCATCTAGACATGGGGATGCTAGTGGGACCAGCTGGCAGATGTGTGACAGACACTAGCAAGGTCATGATGAGGTGATTGACAGAGTCCAAGGTGGTTCCCCAGACAAATAGTAGCAGATGCCAACCTTCTGTGGTGCTCACCCTGGGTCTCCCCTGCCAAGTCCTATCCGGTACAGCTAAGTGCAGGAATCCAGGCTTGCCCGTAATGCATTCTCCTTGCCTACAG
Seq C2 exon
CTGCGGGGTCGCTATGGGGACCTGTTCAGCCTACAGCTGGCCTCTGAGTCAGTGGTTGTACTAAATGGGCTGACGGCCCTGCGAGAGGCACTGGTGAAACACAGCGAGGACACTGCTGACCGGCCACCGCTGCATTTCAATGACCTGCTGGGCTTTGGACCACGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-Cyp2d22:NM_001163472:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAACTGTGGCCCATAG
R:
CTTGAGAGCGTGGTCCAAAGC
Band lengths:
344-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: