MmuINT0045006 @ mm9
Intron Retention
Gene
ENSMUSG00000068086 | Cyp2d9
Description
cytochrome P450, family 2, subfamily d, polypeptide 9 [Source:MGI Symbol;Acc:MGI:88606]
Coordinates
chr15:82284468-82284871:+
Coord C1 exon
chr15:82284468-82284620
Coord A exon
chr15:82284621-82284710
Coord C2 exon
chr15:82284711-82284871
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CACTCCATCTCCACTCCCAGGGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTGTGGTCCTTGCACCCTACGGGCCCGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCTACCCTGCGCAACTTTGGCCTGGGCAAGAAATCACTGGAGGACTGGGTGACCAAGGAGGCCAATCACCTCTGTGATGCCTTCACCGCCCAGGCTG
Seq A exon
GTGGGTGATGGGTGAGGGATGTAGTTGGGCACAGGGAGACATGGGCAGTCCATTGACTTGCTTGCATCTTCACTCCATCTCCACTCCCAG
Seq C2 exon
GGCAGCCCATCAATCCCAACCCCATGCTGAACAAATCCACGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTTCCTCATCAGGATGCTGAAAGTACTGGAACAAAGTTTGACAGAAGTCTCTGGCTTAATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068086-Cyp2d9:NM_010006:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACCCTGCGCAACTTTG
R:
GCGACGGGCAAAAATGAGAGA
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: