MmuINT0045027 @ mm9
Intron Retention
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27916189-27917634:+
Coord C1 exon
chr7:27916189-27916376
Coord A exon
chr7:27916377-27917492
Coord C2 exon
chr7:27917493-27917634
Length
1116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
CTGTCTCTTCGCCCACACAGGGC
3' ss Score
9.83
Exon sequences
Seq C1 exon
CCCGCGTGCAGGAAGAGATTGACCGTGTGGTGGGGCGCTCGCGGATGCCGACGCTGGAAGACCGTACATCCATGCCTTACACAGATGCAGTGATCCACGAAGTGCAACGCTTTGCTGACGTCATCCCCATGAACCTGCCTCACCGTGTCACTCGGGACACACCTTTCCGGGGCTTCCTGATACCCAAG
Seq A exon
GTGTGCTGGGCTCCTAAAATGACATAGGGGTAACCTAGGAAGGGTACCTCAAGCTTTTGTAATTGGCTAAGAGGTACCCTAGACCCTAGCAATCAGCTCCCAGGGTACCAATCAGCAGAGGTGGGAAGTTGCCAATATTTTTTTCCAATATTTAATTTTGTTTTTTACATGTATGGTGTTTCCCCTAAATGGCTGTGTACCACATGCATGCAGTGCCCAAGGAGGCCAAAAGAGGGCGCTGTGGCCTCTGGAACTGAATATACAGATGGTTGGGAGGCATCAAGAGGGTGCTGGGAATTGAACACAGGTTCTCTGCAAGAGTAGCCAGTGCCCTTAATACCATCTCCCCAGTCTTTTTTTTTTTGGGGGGGGGGTTCCCTTATAGCCCAGGTTGACCTTGAACTCCCTACGTGACTGAGGTTGGACTTGAACTCCCGAAGCTCCTGCCTCCTCCTCCAGTGTATTGGAATTCTACCACCCCTGGCTTAGCCATTTTAGATGCTTTAAAACAGAGTTCCTTCATATCAGAAGAGATCGGAACTCCATACACCTTCCTATCTCAAGCCCCTTCCTCAGACCCCTTTCCAGAACTACTGGGCTCTGGAATTTTATCTAAACATCTCCTGAGGCCAAAATACCATTCTTGGAGGACACCCTCTCCAAACACTCCACCCCAACTCCCACCCCACCCCACTTTGCACCCCAGCACACCCCCACTCAGAAATCCCGCGTCTGCTTCTACAAAGCTCAGGACCAAGGGTGGCCCACATCCATTTCTCAGACCTCAACAACAGCATCTAGCACCTATCTCTAGGGGACCTAGGTAGAGTCCCACCTTTTCAAATCCCTAGTGCTCCATCTTTGCAGCACAGAAACTCGAGCTTGGGGGAAAAAATTAATAATAAACCCATTTTCAGAATGGAAAGATGTCTCAGCAGTTAAGAGCACGTCCAAAGGACCCAGGTTGGATTCCTAGCATCCACATAGCAATTCACAACCACCATTTCCAGGAAACTTTACACCCATATTGCACACAGGCAAACACTTAGACATAAAATAAAGTTTTGTTAATCCTCAGTGAGAGTACATTCACTGACTGTCTCTTCGCCCACACAG
Seq C2 exon
GGCACAGATGTCATCACACTCCTTAACACTGTGCACTACGACTCGGACCAGTTCAAGACGCCTCAGGAGTTCAATCCTGAACATTTTCTGGACGACAATCATTCTTTCAAAAAGAGCCCCGCCTTCATGCCATTTTCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-Cyp2f2:NM_007817:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGTGCAGGAAGAGATTG
R:
CCGAAAATGGCATGAAGGC
Band lengths:
326-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: