MmuINT0045029 @ mm9
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27593946-27594864:+
Coord C1 exon
chr7:27593946-27594125
Coord A exon
chr7:27594126-27594701
Coord C2 exon
chr7:27594702-27594864
Length
576 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GTATCTTTCTTCACTCTCAGCTC
3' ss Score
8.41
Exon sequences
Seq C1 exon
ATGATGCTGGGAGGAGCCTTCAGCATCTTTATGGCACTTTGTTTGTCTTGCCTGCTCATCCTGATTGCTTGGAAGAGGACCAGTAAGGGAGGAAAGCTGCCCCCCGGCCCCACACCAATACCGTTTTTGGGAAACTTCTTACAAGTCCGCACTGATGCCACATTTCAGTCCTTCCAGAAG
Seq A exon
GTTAGTGTGCTCATTTCTTCTTATAGTGATGAAGGTCACAGATGGCACAGCTGAGGTCACACAGAAACTCATCACTTCTAAACGCAGATTCAGAAACAAACTTTAGGAAACATAGGATTCTGAAATTACAGGATCTTAAAAGCAAGGGGGAAAAAATCTTAGAAACACTGAGTACTCTAGGCAGAATCCCCTTTTTCTCAGGACTTTAGCTCATGATCTAAGGATTAGGGGGAACCTCATTTCTTTAAGCCCAACTTTCATATTCAAATTGTCTTAGAGTTTTAAGATGCCAGAAACCTAGCATTTCCAAGAGTGTGGTTGTAGATCTCAGAGTTCAGCTAGTCTGACCCCATTATTTTATAAACAAAACTAAGATGTACAAAATTAGGAATATTTGCTGTCTGAGGTCACAGGAGTCATTCTGTGTTTTTTTTTCCCCAGTAGCCCTTTCAAGCTCAAAACCTTCCTCTAGTCTACCTTTTCATTCTCCTAGAATCTCTGCCCTCTACAATGCCCTGACACAGCTCTGTCATGCTCCAATTTACTCCTTCCTTCAGTATCTTTCTTCACTCTCAG
Seq C2 exon
CTCCAGAAAAAATATGGCTCTGTGTTCACTGTGTACTTCGGTCCAAGGCCAGTGGTTGTCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGCCGTGGTGAAATGCCTACACTAGAGAAGAACTTCCAAGGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-Cyp2g1:NM_013809:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=43.3)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCTGGGAGGAGCCTTC
R:
ATAACCTTGGAAGTTCTTCTCTAGTG
Band lengths:
342-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: