MmuINT0045127 @ mm10
Intron Retention
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139353840-139354389:+
Coord C1 exon
chr5:139353840-139354002
Coord A exon
chr5:139354003-139354239
Coord C2 exon
chr5:139354240-139354389
Length
237 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
GGCTCATGTCTACCTGACAGGCA
3' ss Score
5.22
Exon sequences
Seq C1 exon
CTCTCAGAACGCTACGGGCCCATGTTCACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTATGAGGTGGTGAGGGAGGCCTTGGTTGGAACCGGGCATGAGCTAGCCGACCGGCCCCCAATTCCCATCTTCCAGCACATCCAGCGAGGTGGGG
Seq A exon
GTAGGTGGGCATTGGGGTTCCTTGCCAGATGGGGGGGAGACTAGGCCTCTTGGATTGGTACTAGGGAGAGACAGGATCAGCCTATTGCAAGACAGGAGAAGTATGACCCAGGGTAACCTCCGAATGGGAGGGGCATGGAGTTGAGCCTGCCCCCCCACCCCGAGTGGGCCCCCTGTTCCCTGCATGCATCATCAGATGGGGCGTGGCTGGCACTCATGGCTCATGTCTACCTGACAG
Seq C2 exon
GCATTTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGTGTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541:ENSMUST00000200478:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGAACGCTACGGGCC
R:
CCTTTAAGACAGGCCAGCTCC
Band lengths:
293-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types