MmuINT0045280 @ mm9
Intron Retention
Gene
ENSMUSG00000078597 | Cyp4a12b
Description
cytochrome P450, family 4, subfamily a, polypeptide 12B [Source:MGI Symbol;Acc:MGI:3611747]
Coordinates
chr4:115107573-115107861:+
Coord C1 exon
chr4:115107573-115107637
Coord A exon
chr4:115107638-115107784
Coord C2 exon
chr4:115107785-115107861
Length
147 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
ATCTGGTATTCACACTGCAGGTG
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTATCCATGTCATGCTCTCCTTTTATGGCCTTCATCACAACCCAACTGTGTGGCCAAATCCAGAG
Seq A exon
GTAAAATGGGTGATAGGACAAGGTCAGGGGAAGATATCTCAGGACCAACACTTCCTCCCACTCTCACTCCTGGACATTTGGTCTCTTCATGAGTTGGAAGGAGGAGTTTGACTCCTACCTTCCCTGAATCTGGTATTCACACTGCAG
Seq C2 exon
GTGTTTGATCCTTCTCGATTTGCACCAGGGTCTTCCCGGCACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078597-Cyp4a12b:NM_172306:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTCATGCTCTCCTTTT
R:
CTTGCTCCTCCTGAGAAGGGC
Band lengths:
139-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: