MmuINT0045324 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115247305-115247571:+
Coord C1 exon
chr4:115247305-115247369
Coord A exon
chr4:115247370-115247494
Coord C2 exon
chr4:115247495-115247571
Length
125 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTCTACCTGTTCTGACTGAGGTG
3' ss Score
-3.98
Exon sequences
Seq C1 exon
GTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
Seq A exon
GTAGGAAACCCCCAAGGAGAGCAGAGAAGTTGGTCACAAGACCAATAAATACATCCTATTGTTCCCACCTCTGGGCAAATTGTCCCCTTTTGGGTTGCAATTGACCTCTACCTGTTCTGACTGAG
Seq C2 exon
GTGTTTGACCCTTCCAGGTTTGCACCAGACTCTCCCCGACACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGGTCACACTCTCCA
R:
CTGGCTCCTCCTGAGAAGGG
Band lengths:
142-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: