MmuINT0045385 @ mm9
Intron Retention
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32823004-32827733:+
Coord C1 exon
chr17:32823004-32823202
Coord A exon
chr17:32823203-32827588
Coord C2 exon
chr17:32827589-32827733
Length
4386 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GGTTCCTCTCTTGCTTGCAGATC
3' ss Score
10.01
Exon sequences
Seq C1 exon
GATGCCACAGTTGGACCTGTCTTGGCTGGGACTGAGGCTGGAGGCATCCTCACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGCCCGTGTCCTGACTCAGACCTATATCTTCTACAGAACATATCATCATCTTTGTGATTTCCCTCAACCCCCCAAATGGAATTGGTTCTTGGGTCACCTAGGCATG
Seq A exon
GTGAGTGCAGCAATATATTGTGGGTCTTGTATTTTGGAGAGAATGGACCAGGAATGGACCTCAGGGGATGGGTCTGAAGTCCTCCAGCATCCTTCACTAGCTTTTCTCATGTCCCTGCCTCCACCCCTACTTTGCTCTGGATTAATTTCTAGTCCATCTTTCTTACACTGGTGGACACTTCCAAGGTAGACAATACAGAGTGAGGACCCCTGGGGTTCCCTCATTGTCTGCTGGACTTGAGGCCTCTTGGGAAGCTCTGTCCAACGTCAATGCCATTTTTCTGTCAATCCATATCAGGGTTTCCATGTTTGCCTGGGGGTAATCTCTGGTATTCCTCTCCTACCACCCATGAAGCAGGAGAGTTATGGGTTGTCTTCCTGCCTCTTGTTCCTGAAGCACTTTTTACTTAAAAGCTGTCAGTTCTTCCCTAAGATGGACCATTGAGTCCTGTTGCCCAACTGAGATAAGAGTTGTCTCTTCACCCTCCCGTAAGCATTCCTTGACCCCGTGCCTTAGATTTTGACCAAGTCTGTTCTTGCCTTTGGGTGACTCGGTCTCAGTTGCTTCACTTGCAAACACCGAAGCTCACAACATCTGTACACATCAGTGACATCATACGCAGGGTGATGTTTGGTGAGAGCATGGGGCCTCACAGGTAGGAGTTTCTGCCCTCCTAGAGAATTAGTGGTCCCCTCTTGTCCTGGAGTTGACTAGTCCCTGCTCTGCAGACCTTTTGCACAGTTGGAACTGCAGACCTATCCAAGTTTTGTTTTCATTCTGTTGCTGTGATAAAACACTGACCAAAAGTGACCTCAGGAGGAAAAAGTTTGTTTGAGGGTAGTCAAGGTAGGAACTCCAGCAGGAACTTGAGACAGAAAGCGTGGAGAAACACTGCCCATTTGCTCACTCTCAAGCACATGTTTAGCTAGCTTTTGAAAAATACAGTCCAGAACTATCTGTGCAGAAAATGGTGACAGGTAGAATGGCTGGGTGCTTCTAAATCAACTAACAATTAAGACAGTCCCCCAAAGATGTGCCCACAGACCACTCTGATCTGGCAGTACCATGCAACTGAGACTCCCTTCTCAGGTGAGTAGAGGCCCTGTCAAGTTGTCAATTACAACTAACAGGCTTCAATGTTGCCTAGACACCCCTAAGTCCCGGTTGAGACCTTCCCTGATGATGGTCCCTGGGGCTGAAATTAATACCACCAGAGAACATTCATCTTCGCAAGCCAAGGTGGCTATCTCTGACGTAGGCTGTATACCTTCTCCATTGGCCCTGGGATAGACCCTTGAGACTCAGCCATAACCCTGAGAAAGATGGAGCAGGACTCAGCACAAACCCATATAGTGTAGGCTACTTGTGCAAATCTTCACATCATGTTGCTGTCCTAAATATTGTAGGTATTTGTAAGACAATGGTGTTTATGTATCTAAATACATCTATATATAGGATAACAATAATAAAGATATTGTGCATAGGAATTCTTTGGGTCCATTATGAGCTTATAGGGCCAGGACCACACATATGTAGTGTGTCAGTGACAAGAACATCATTATGCAACACATGATTATATTCAAATAATTATATATACACATGTGTGTGCATATATATACACACATATATACATATATATATATATATATATATATTTAGAGAGAGAGAGATGCATGATACATTTATAAATTCTATACATTGCACACACATATATATATAAAAGAGTGAGGGCAGAGAGAGGGGGTACATTGTGTTATGGTCATTGACTTATATATTGTGGGTTCTAAGCATGCTACAACATGCCATCTGCAAAGTGGAAGCCAGCCTGCAAATAATTCTGAGGCAAAGGGTTGGCATCCTGTGCATGGGGAGATCCTTAGGGGAGGGAGGAGTCGGTGGGATAGGGTTGAATCTGTAAATGTAACTTTTATTCACATGAGGAATTGTTGTCTCTGATGCTTACTGCCTCCACCTGCTAACCTAGGCCTACTTCCGGTCTCTGTACAATCTTACCTAGGCCTAGAAGTTTGCAGCCTCTGAGATTTCCTGCCGAATAAGCTCACCCTTGTTGGTTTTCTCTGAACTCTGACTGGCTGCTTTAACCCAGCTCTTCTGTCTCAAACTCCTCTCCTCTGACTGATTTAATCTGCGCTCTCTCGCTCTCTCTCTCTCTCTCTCTCCCTTTTCTTCTTTTTCACTGTTCTCTTATGAAGCTTCCCCTTCCTCTTTCTTCTCCTGAGAGTTGGGCATATCCTGTCCTCTTTCTATGATTCACCACATTGTCTGCCACTCAATTAGACACCAGTCTAATGATGGCACCCAGTCAAACATGGGTGCTTCTTTCTACAAACTAACTTTACCTTTATTGTTTGGAATTAAAGGTGTGTGCTAAGGGTACGTCTCTATTCCAATCAGAGGTATCAAAGGTGAGTGGGAAGGGCTGAGCCACAACACAACTAGAAACATTTTTTTTCTAGTAGACGACATTAACTTGGGGTTCACAGTGTGATCGAATAGCCTGCAACAAGAGTCCAAAAGTCAACAACCTGCATTGTGATGTCTGTGGGCAGAAGATGGCTATTGCAGTCAGAAAACGAGATTGAGATTTCTTCATCTAATTGCTCTATATTACCAGTTCTCAACATAGGGGTCTCCACACACAGGTTGATATGTGGGTTGCATATTAAATATTACATATTTATATTATGATTCATAATGGTAGCAAAATTACAGTTATGAAGTAGCAACAAAATAATTTTATGGTGGGGGGGTCACCACAGCGTGAGGGACTGTATTAAAGGGTCGCAATATTTTTTTTCCTGTACAATAGTCATATATTTATTCTTAAGCAAGTTATCAATAAAAAATTTAATAGTAAAATGCCTTTACATAGAGTCTGCTGTTCATAAAACCTTTGTTTTTTTGTTTTTGTATTTAGTGTTTACATTGAAAAAAAAACAACAAACCAACCAACCAGCTTCTTAGTTTACACATTTACAAGATTCGTGCTTTTTACCACGTTAGCCACAGTTGGGGAGGAGGAGTCACACCGTTTGTGTGTACACACAGAAAGAAAGGAAAAGGATGGGGGGGACCTAAAGATAAAGACAGAGCAAGAGGACAGTTCAGCAGAGGGCAGAAGAAACGCGGAGAAGGTAGCACACAGGACAACAGCCTTTCTACTTGCTCTGGGGCTCCTGGGTACTGGGGTTCTGGGCAGCCTTTCTAGTGACAGCCCTGGTCTTGATTCTTAAGTCACCATCTTCCTGATTCCCTGGCTGTGAGCAGGACCCTGGTGGTCATCTCTTCTGATGACCACCAAGGATGGAATATTGCACTCATGTGGAGAACAGAAACCCTCAGAGTGGTGGGACAGCCAGGAACGGGCACTCTTGGTGTTCCCGTGGACCACCAAGAGGGACCCTTGGAGCAACTAGTAAGAAAAACAGAGTCCCTGGGATCAGGATAGATGCTTGGCGGGCCTGAGCAAAGGAAGAGAGGCTGGGGGTTCCCAGTTAGGGCTGGGTGACCTCCAGTACTCCCCACTTCCTAGGAAGCCTTGGCCGAGTGGACACTGGGGAGCACGGGTGCCACAAGGCATTTCTGAGAACAAAGGCTTTTGGTCCATGGGTCTAGCCTGCTCTTTCCATCATGGGAGAAGTGAGGACCGCCTGGCTTTCCTGGTACTTGGGGTCAGGATGTGTATACAAGAGGCCAGAAGGGACCCTTGTTGTATATACTCTGTGCATGAGCCTGCCATGCTATCTGCCCTGCTGAGTGGCTATAAAAAAGGTCCAGAAACTGTGTAGGTGTGGGGTGGGCAGAGGGGCCCCAGGATCAGGGTCTAGGTTGAGAGAAGAGGAGCCGGATGGGAGCCCCCTTGGGTGAGCAGCATCGCCTTTCTACTGTTGTGACTCCACTACTGGCTCAGCCTCATGGCTATCCACATTTGAGGCCATCCAGAGGTGGTGGGGCCCCAGGGAAAGTATCTGGTGGGGAAAGGGGGTGCATCTTAGTGGTGAGAATGTTCTCATGCAGAACTGTAGACCAGCCCCAGACAGGCCCCAAATTCTGGCCCAGACAGGGAGCTGGACCAGCTGCACCATTGGAAGCCCTGCAGCTCTTGGGGGAAGGCAGCTGTTGCCCTGAAAGGGTCGCAATATTAAGAAGATTGACGTCTTCAGTGGGTTGGATGGTGCTGCTCCACAGTGTATAGGGTGGGTCATTCTGACCGAGACTACTGATGCAAACACTAATGTCTTGTGGAAACACCATCCTAGAGATAACCCAGAAGTCATGATGTATCAGATACTTTCTGACCATCTCATAGCATCATGTGCTTGACTCCTGACAAACCAACTCAGGAGGTTCCTCTCTTGCTTGCAG
Seq C2 exon
ATCACACCCACTGAGCATGGTCTGAAGGAGGTGACTAACCTGGTGGCCACCTACCCCCAGGGCTTCATGACATGGCTGGGTCCTATCATTCCTATCATCACTCTGTGCCACCCTGACATCATTCGATCTGTTCTCAATGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424-Cyp4f15:NM_134127:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=20.9)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: