MmuINT0045399 @ mm9
Intron Retention
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32679683-32679949:+
Coord C1 exon
chr17:32679683-32679736
Coord A exon
chr17:32679737-32679821
Coord C2 exon
chr17:32679822-32679949
Length
85 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGACATTACTGCCCTCCCAGGGG
3' ss Score
6.12
Exon sequences
Seq C1 exon
CTTTGGTGGCCCCAAAGGACATGACATTTTTACGCTTCCTGAAGCCCTGGCTGG
Seq A exon
GTGAGTACCTTGAAGTGAGTCTCAGAGGACTCCTAGGGTCAGAGGAATTTTCCACCTTTGTCCACTGACATTACTGCCCTCCCAG
Seq C2 exon
GGGATGGGCTCTTCCTGAGTTCAGGTGACAAGTGGAGCCGCCATCGTCGACTGCTGACACCTGCCTTCCACTTTGATATCCTGAAGCCCTATGTGAAGATTTTTAACCAGAGTGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440-Cyp4f16:NM_024442:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCAAAGGACATGACATT
R:
TGCATGATGTTCACACTCTGGT
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: