MmuINT0045568 @ mm10
Intron Retention
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58148166-58151168:-
Coord C1 exon
chr2:58151114-58151168
Coord A exon
chr2:58148269-58151113
Coord C2 exon
chr2:58148166-58148268
Length
2845 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TATCCACTTATATTTTATAGACC
3' ss Score
7.53
Exon sequences
Seq C1 exon
GAAGGTTGTTACTGTGGAAAAGCAGGACAATGGAACATTTGGATTTGAAATTCAG
Seq A exon
GTGGGCAGTTTTTAAACATTTTAGATTTATTTCCAAAGGAAAAACAGGCACTAATTCCATCATGATATTTGTAAGGAACAATGAAGTCAGGGTAGGGTTAGGATGACAGTGGAGACTAGATTTTATTTAGTATGTGGTTGTTTGTTCAGTGTGTTGAGTATTATGGGGAGAGAAAATGTTGGAGCTTATATTTCTCTAGAGATGCAGCTTGCTCCTTATGCATCACTCTGGTCTTCCTTAAGGAGAACTCCAAACAAAGGTGCTTGATATTTCTGGATCTTAAATAAGAAAGCAAAAGGCATTTACAGAAGTTTATTTTCATATAATCATATTCTTGTATTGTATGTAAATCAGATTCTAAACACTTGAGTTGGGCATGGTGGTTCACAGCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGAGTTCCAGGCTAGCCAAGACTACACTATGAGACCCTGTTTCAAAACAAACAAACAAACAAACAAACAAACAAATACTTGCCAGATGGTATATCTGTGTATATAGACTCCAATAATGTTACAATTGAGACCAGTTTTTTTTTTTTTGGAGGGGGGTATAGTGAGAAATTTATCACACACACACACACACACACACACACACCCCATAATTACAGTTTATTACTTGAAAACCATTGGTGAAAATTAGTACTGGTCTTCATAGGTTTCAATGTAGCTGTCCAAGAATATCTGTTGCCTGTCTTTTCGTAATTATATTTGAGAAGATGGAGTCACGTGGACTGTAGTCTGATTGAGTGGAACAACTTAAGTCTCATTTCCCCCACATTGTTTCTGCATTTCTTTCCCACGTGCTTTGCATAATCGTATTCTTATGCTGTATGTCAGAGTTTAGGTCTTCGTCAATGAATGCTGCTTTAAGAAAACTTTGCTATGATAGCAACCCCATGAAAGGGAACTTGGTTGTATTTTAAGAGCAGGAGCAGGAAGCTGCTACATTAAATGTGTTTCATGAGTAAAGAAACAACATGGAACGAACGGGGAAGTAGTGGGGGCAGAGGTTTCTGCTTTCTGAGCTCCATTCCTCTAAAATGTGGTGCAATCTATAATTTACCATAAAATCATTGGGACATAATTTTTTACCAAAAGAAATGTGCTAAATCTATCAGATTTTAGAAGTACAGGCCCCTCACAAGAGAGCCATTTGACTTTCTCTGAAGATAACTGTATGTCCACTCCAGCCTCTTCAAGGTTGACTAGAGGTAGTAACTGCATGCCTATCACTGATAGCTTCTGTTTCTCCCTCACCACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAATCAAAGTGAAAAATCATCTTTACTAGAGGACAGACCACAGAACCGTGAAACCTTAGGAGTTCAGAGAGACCTGATGGCTTCACCTCTGAGCTACAGCGCCTATATGTCATCTCAGGGACGCTTGAGACAATTTCTTTCTGAGCCAACAGAACACAAGGATGGGAGATGTGGGTGGGTGATATGGTCATATTATTTGACCAAGTATTCTTTTCTGTGCCTTCATGGCTTCTGGTTTCCCCCTTTTAACTCTAACCCCCAAATTCACAGCTGCTCTGCAATGTGCAGTTGTACATAAATTGGAGTGTTTCTTTTGCTCTGTGCTCACTTTGATACCTAGGCACGGGAGGTGGGTTTTTCTGTTGATGTGGATTGCTATAACAGTGACTTCTAAAAGGTTTTCAGTCAGTTTTCGGCTCTTGCGGCACATGAATTAAATTGGCTTCTATTTCTACAAGGAGCTGAGCTCTGGTCTGAGGCAAGAAATTATCACAAAAGGTTTCTGATTCAGGTGGAACACATGTTATAGGCCACTTAAAGTTCCTCTTCCTTTCAAATAGAAGATTCTAAATGTACTACGTCTGAGTAGAAATCAGCATTTAACAGAATCCAGTGACTAGCTCTGGGAATATCTGTGTGTGACTGATCATCCTGTCTCAGGTGTGGAGTCCTCTAGAAGAAAGCAGCACTCTGATGTAGCTCAGCTTTTAGCAGTCAGATTTGAAAGGATAACTCGAAACACTGATTTTTTTTTTCAGAGTTACAAAATTTTTATACAGAGCAAATGTTTCCCTAGTGTTTTTATACACTTCGAAGTAAAAACCAAAAACACCAACAATAGAACTCACTGAATTATTTGTGTCAAACTGAGACATCTGGGGAAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTCATTTAGTTGGATGGTTGAAGAACTGATGAGAGAGAATTCAGGGCAGGAGGGGTCTGTGTGCTCAGAAGTGAAATTGACTGAGTCAATTAGAACAAACCTAGGGCAGATTGTCATTATTTGCAGAACTCTGATTTAATATAATTACTGTTGGCCCATCTCCCTGCTGGGTATTTTCTATCTCATACTCTCTCCCCCAATGCCTGTTTTAGCCTGGAACACCCACAAGGATCGTTTTCTTCCACTTGGCTATGGTTGTTTCATCCCTTTTAGAATTAAGACTCTTAATTTTTTTTCTTAATAAATGCACAGTGAAATCATCAGGTGGTCTCTTAGGCTTGTAAACAGAACATCTTGAGACACTCACATCCCACTTTCTTTCTCATACCGGATGTTTTATGAATGGAGTTGGCTGTTGATGATCTGGTGGGATTGCAAAATTGGTAACTTCCATTCAGTGTATGTCGAGAAAAGCTTTTCTAAAGTTGTCCTTTGCCCTAACCTATCATGCCATGGTTTTAGGTTTTGACCAATATTTGTTGACCTTTTGGAAAAGTTACTATGTATCCACTTATATTTTATAG
Seq C2 exon
ACCTACAGACTCCAGAACCAGAACATCTGTTCCTCAGAAGTGTGCACTATGATCTGCAAAGTGCAGGAAGACAGCCCCGCTCACTGTGCTGGCCTGCAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832:ENSMUST00000028175:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
NA
C2:
PF0059519=PDZ=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types