MmuINT0045569 @ mm9
Intron Retention
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58000286-58000679:-
Coord C1 exon
chr2:58000577-58000679
Coord A exon
chr2:58000380-58000576
Coord C2 exon
chr2:58000286-58000379
Length
197 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
TTTCTCTGGGCATCCCACAGGTG
3' ss Score
8.58
Exon sequences
Seq C1 exon
ACCTACAGACTCCAGAACCAGAACATCTGTTCCTCAGAAGTGTGCACTATGATCTGCAAAGTGCAGGAAGACAGCCCCGCTCACTGTGCTGGCCTGCAAGTTG
Seq A exon
GTAATGTAGCTCCGCTCATACTAGACGTCATTAAATACCTAAAGCCTCTTTGATAGCGAAGGTTAGGAAGCAGTTGCTGCTTTGGATTTTCTTGAGTGACACTGTGGTTTGGGAGCGTGCTTGTTTTCCCTCATTTCCATGTTGTGGGGATTGTTTACGTAGCTAATAAAACATTCATTTCTCTGGGCATCCCACAG
Seq C2 exon
GTGACATCTTTGCAAATGTCAATGGTGTGAGCACAGAAGGCTTTACTCACAAACAAGTGGTTGACCTGATCCGATCATCAGGAAATCTGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-Cytip:NM_139200:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(39.1=100),PF081196=Toxin_31=WD(100=88.6)
A:
NA
C2:
PF0059519=PDZ=FE(35.6=100),PF081196=Toxin_31=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACAGACTCCAGAACCAGA
R:
AGCAGATTTCCTGATGATCGGA
Band lengths:
194-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: