MmuINT0046024 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr3:36050002-36058570:+
Coord C1 exon
chr3:36050002-36050117
Coord A exon
chr3:36050118-36058443
Coord C2 exon
chr3:36058444-36058570
Length
8326 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCTATGTATTTTTATTTCAGGAA
3' ss Score
7.99
Exon sequences
Seq C1 exon
GGGTCTCTTCCGGTGTAGACTGTAGCTCAGCCCTGCGGCATCCGTTTGCCCTGCGTCTGTAGGGTGCCGGGCCATCCACCGGGAGGACGCGGACTCCGCGTAGTCAAGCCACAATG
Seq A exon
GTGAGTGTGCATGGTGTCCTGAGACTGGAGGGAGGCTGTGTAGAGCCGGTGGGAATCGGCTGCGGCCAGTGCTCGATGTGGGAGGACGGTGAGCACTGCTGAAGCCTGCTGGTGAGTGTGTGCGTGGCGCGGCGAGGCTGGAGGGCTGCGGGGAGCCGAGGGGGAGCCGGCGACTGCATGGGGGGCGACGGCGGCCCCGCCTTCCTGCGGCCGGCCCTTGGGATCGGCCGGCTTGAGGTCCCCCTTGGTGGGCCATGCGTCACCGCGCAGCCTGAGCTGGAGATCCCCGGTACCCGGCCGCGCCCCCGAGCTAGCCGGTGCAGTGAAGGCCCAGGGTCAGACCCTGCTGCCCTGGAGTCCTCAGAGGCTCCAGCCTAGTAGCCCGGATTGTGCGGCGATAACCTGCAAGCGTAGGGCTCCCGCAGGGAAAGTGTTCAGTGAGGTGTCCTGTCCCTCCTCCCGAGCAGTCTAGATAAACGCGAAGCAGAATCTCCTATCCAGATGACTGCTCTTCCCCTGTCCTCGCTTCTCCTCTGGTTGGAGGAAGATTCCTAAATTTCCATCTCCTGACCGCATTCCCAAATGCCCATTTAAAAAATAATATTAACACCCATTTCCCACGCAGCATTTCAAATAGACATACATTTTGCTTGATTGGTTTTTTTCCCCACTCCACACACTGGGCGACATTTTAAAAAGGATTTACCCTATGGATATTTAACATAAAATCACTTGATTTTTTATTAAAACACACACACACAATGCCTCTCATTTTGTCATCCTTAGACACAGGAACCCCAATCAGAATGCTTTGGGGTTGTACTTGCCTTTTGGAGATTTTCCATAGTGATGGGTCTATCTTCATCTGACTCTACTTGGCCCTTTCCTTGCCCGGGTTTCAGAGATGCCAACACCAGCTGCCTTGTCTCCAGTGTCTAGGAGCATCCAATGATGTCAGTGTCTGGGCTGATCGTCCCAGCAGCCTGGGGTGTGAGGCTAGACCGCATTGGGACGCTGCTGGATGTCTTGGTGTTCTCCCATCTGAAACGCACTTGAGCTATCTCAGCCTTTTGATCAATATTCTGCCAGTTGTACTTAGCATGCAGGAGGCCTTCTGGTTGCTTAATTAAATCCTTGCTGCAAGTTTGTAAGAATGAATCCAGACTGCCAAGTAGTCATGGGAGAAGTGTTCTGTAAACCAGTTCTGGGCTTTCCCGCCTTGCTCTGCATCCCTTGTAGGGACGGAAGGTGACAGGGCTCATGGGCCTGCTTGTCCCCTTGTTTAGACTCACTAGCCTTTCTTGCTTCCTTGTTCTGTTGTTATTGTCTCTTTTTCATTTGTTTATTTATCTTCTGAGCTGGATAGGTGCATGCCAGCCATGGGATCCTGTGGGGTGAGAGGATTCTGGTCGTCTGTCCATAAAGGGAATCCCAGGGACCAAACTTAGGTTGACAGTTGTGGCAGCCAGTGCCTTTAACCCACTGAGGCGGTTCCTGAGAGCAGCCATTGGGGAAAAAAAAGTTCTTAAGGGATTAGTAAAAAGGCCTTTTCTTTTTAGCCTGGAAATAAGTCTTGTGAGTTTTCCTTTCTCAGCATGAAGCCGGTCTGCAAGGTAAACCTGGCTGTGGGTTGGCCTTTCTCAGCAGGAGACCCCCGGTAGCTCTAAGCTAGCAAAGAAAGGCCTAATTTTTAAATGTGAAACCACACCATGCTGGCAGGTAATTGGGCCTCAACCTCTACCCAGAAGCCTTTTTTTTTACTTAAGAGACTAAGATAATTTAAACCTTTTTAACGTTTTTAAATTTGTATCATCAACAAGTTCAACTTTTGTACCCAAAGTTATTGTAAGGCCAAAATGTTTGTAAAGTGAAACCGACTTTCTAGGTATGGCTGGACTGATCTGGCAGCGGTAGCCTAGGCAGTGGGGCTGGCTGAAGTCAGCTAAACATAAGCTAAGGCCCACTGCCAACACTATCACAGAGATCTGAGAGGGATAAATTTGAGTAGGAAATACAGACCCAATGGCCTCTGTATCAATGAGGAATGACAGAATCTAACCTGCTACCTGGACAGGCCACCTGGGCTCCTCCATGCTGATCTTGATAGCTTTGTTGCAGGCAGAGGACCCAGGGCAGTATTAGTCTTTGGTCTGCAGGTCCAGAAAATCCAAGAAACTTTCCGAGGAGGAATTTGGGGACTGAGCTACCTTGACGAGAGCAGGAGAGAGGCAGTAGATTGTCCAGTGTTGCCCTTGTCTACAGTTTGGCCAGGTCCTAGTGGTTGGGGAGGTGAATGGCAGTTCTTTGTCCAGTTACCATCGCAGCTCTGTTCCAGGTGAAGTCCACTGCCCCTTCTTCTTTGGTGGAGGGTGAGGGCTGTGGCCAGGCGCTGGGGTTTCTGCCTTTTTCATTAAACACCTGAAATGCCATATTTCAGCAGATCTCTCTGAGGGGCTTGAGGGCTGTCATTGAATCTATTATCTGGCCTGATTTTAAACAAAGTGTACTTGTTTTCAATTACTTGTTTTCGGCTTAACCTTGATGACATGTTCAGGAGGCATGTCCCTTTAAATGAAATCACATTATACTTAACATGACTACAAGCATAGTTCGGAGCACATGAAAGACTGATCATGTATAAGGCAACTGACCTTGAACTTGCAAGTCTTAATTATCTTTAACAGTTTGCAAGGTCTTGGCTTTTATAAAATCAGGGTTTTGCAGTTTTATCTCTGTTAATTGAAGATCCGTTAGCATTGAAATAAAACTTTAAACCATGAATACAGTTCACAGAGAAACTGACACCTTGCTTTTCTACCCTTTTACAGTATACCTTTGTAGACTATCACAGTTTCTTCTATGAGTCAGTTTATTGAAATAGCTAGAGCTTAACACAGTTACCAAAGACAAAGGCCAGACACCTTTGTAAGCAAGTTTTTGTTAGCTTGAGTAGACCTTAGGAATTCATAAACCTTATTCATCAAACATGTTCCTTACTGAAAAAAAGTTTTGTTTTTTTTTTTTTTTAGGAGCTTAATGTTGAACACAGTTAGCAAAGACATAAGTGGTTAGATAAAGCAGAGGGCTCCTTAGGACTAAGAAATTTTATGGATACTGACATAGTTTATATCTGTGGTTACCTTAACCTAGATGGCGACAGAGTCGCGTGGTATGCCCTCTCTTTAACCTTAGTAAAGATGGCTGCCAACCACGTGGTTGTTATTTACTCTAAAGTGAGCTATCAGGCAAGCATATTTCTTTCTCTTTAAAAACATTTATTTTCCTAAACAAGAGCTGAATCCAAGTTGCATATAAGCATGTTGTAGCAAACTAAGATTACCTTAGTTAAGATTACCTTGGTTTCTTACTATCAACCTTTTCTGTTAAAGTTTTAAGCTTTTTGTTACAGATTTCACAGGTTGTTTTTTTTTTTAAACCACACCAAATGAACTTACAAATCCTGAGATAAAGTTGTACAATGGTCTTACAGATACTGTGTTAAAGTTTGTACTTCAGCTAAAGTTTTCAAGCTCTAAGAGAGGACAGTATTAAGAGAGTTAAGTAGGACCAAGAAACCGGTATGGGGTAAGCAGCAGCAGCCCCTACTGGGAGCAGTTCACTTCTTAGCTGACCCATGCCACATGCTGTCTTTTCAGGGGCTCTTAGGTTTTGCCTTCCAACTCCCTGTCACCGTCACGTGGCTGTCCTGACCCAGGACACGGGAGAGTTTGGAGAAGACATTTAAACAGCCATGCTTGGGTCTGGAAGAGCAGGCCATTAACTACAGAGCCAGCTTTTTAGTAGAATAGCATAAAACAATTTTAAATATTATCTGTACCTTCAAAGACATTTGAATCTTTTAAAGATGGAATCCAGTGACCAGTGGGAGAGACTAGAGACAAAGGAGGCTTAGGGACAAGGCGATTTTCAGATCTGCTTGTGTGGTGGCAGAAGTTGTCTGTCTGTGATTATTTGGCCATTTGCTGACCATTGAGGCTGATTAACTCTTCCGTACTGAGGACACTCTGGGTATAGTAAGGCTGAGACTTTAATGGAATCTTTGAGTCTGAGGAGAAAAGAGATTAGAGGAGGCAGGTACTTCTGAACAGGAAGAGCCCATTGTGTGAGACAGGAGCTGAGAGACCTAGCAACTGGGAAAAGAAGATGTCTTTCAGTAGCAGAGTGAAGAGAGGTGGGAGAGGCTTAGGGTAAAGGGTGGGAAACGGAGCTCCGGAGCTCCGCCAGAGGGAGTGTTCCAGTGTCAGAGGCCCAGAGGGAAGGCAGGATCCAGCCAACCAACGAATGGGGCAGAGACAGAGCAAGCAGCTAATGGAAGGGAGGGAGAAAGGAGGAGCCATAGTTAGAGAGCAAGTTCCAAGGAGAGGGCTGAGAGACAGCAAGGGTGGCAGCCAGGGGAGAGACTTATTGAGTGCCGTGGTGACAATAGCAGTTTGGGGTGTCCCCAAGCAGACCAAAAGACTTGCAGGATGGTGGAGGGGCATCCTTCCTCCCCATGATGGGACACCCAGCGGGATGTAGGCTTCCTGACAAACCGGTGGCACTTTGTGGCAGGCTTCTGGTGAACAACAAGCAGTCTTAAGAAATCTGCTTTTCCAGTGAACAGAAACCTGTAGGCTTCTTTACCCAGTAACTATCCCTGTTTACCTGATTAAAGTCTTGTTTAGGACAGTGTCACCATCCCTGCCGTTTGGGGGGACCTGACAGCATGCACACTTACCCTATCTTTACAACTTTGTAAATATGCGCATTTCTTTTAAGTTTAGAAATAAGGATATTACAACACCCAAGTTTGCGGCATAATATTAATAACTACTAATTTTTAAAAAGACTGTAGGCTTGGTCACAAATATCGAGTTAAATTTAAATCATTGGGAATCTTACCTCAATTGTAATGGCCACTTTTCATGAATAGATACTACACAAAACATTAAAAAAATGTGGAGAACAACAACCATACTAGTCTATTGACAGAAAAAAATGAAGCACAAGAACATATAGACAGACTAAACAGAGGCATGTGTTAAAACCATTCCTGGCCCAGCAGGACCAAACTCTGCTGTAGGACTCAGGGTCTGTTTAGAAATTCACATATGAGCTTTTCAAATGGTTACCTGTCTCAGAGGAAATTGTCATATTGTCTCTTCCAAAGTGCTTGAGGGGAGATAGGCTGGGTTAGTGAGTTTATTCTTAAGTACTGTAGCAAATAGAGGTGGAAGAGGTAGTGCCTAACTATTACATCAGTTTTCTAACTCGTGATTTTTATTAAAAATTTGTATTGCATGTATTTATTTGTGTGTGTATGTATATATATATATATATATGTATATATGTATGTATATACACACATATATATGTATATACATACATATATACATATATATATATAGAGAGAGAGAACATGTATGTACCACAGTACATGTATGATGGTCAGAGGACATCCTGCGGGAGTCAGTCCTCTCTTTTTACCATGCGTGTCTTTGGTGTTGACCTCAAGTTGGCAGGCTTGGTAGCAAGAACTTTTACCCACTGAGCCATCTTGCTGACCGTCGATATGTTTTAAATTGCAGGCAGAATCAGTTCTGATTAATTTACTTATAGAATATGATATAAAGTATTATGGTGTAGTATCATACTTCATGAAGATAATTTTGTTTCTTTTTATTTCAGTTTTTCAAGGATGTATAGAACCATACTGGCATGTTGTATTAAAATACATTTCTTATCATGGGCTAACTTTTAAAAAGCCACTGTTTGGGAACCCCACATTATTGTTATTCATTACTGTGGAAGTGTCTTTAAGGTACTTCTTGTTTACATTTTAATATAATGCACACCTGCCTGTTTCAAGGGTATAAGCTGGTCTTAGTGGCCCTTGTTTCTCCCTGTGAGGTTTTGATTGTTTTCTCGTGTGCCCTTTGAGTACTGCTCCATGATCCCAGGCCTGGAATAAAGATCTTAGACAAATGTACTAGATTAGAATTGGTGGTGGGCGTGGTGGCACACGCCTTTAATCCGAGCACTCGGGAGGCAGAGGAAGGCGGATTTCTGAGTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTTTCTCGAAAAACAAAACAACAACAACAAAAAACCAAACAAAACAAAAAAAAAAAAAAAGAATTGGTGGTGGTGGCGTTACCGTGAATAGAGGTTGATAATGATGTAAACAATGCAGGAGACTTAAGTGGCTGACAACAGAGAACAACACATTAGGACCACTTGAGGGTCCCAAAGAAAATGCTGGCTCCATCCTTAGCAAGAGCTGCCTCTTCTCTTCCCCAAGGAGTTCTTTCCTCCATCACCTTCACCACAATTCTGTTAGTGCTTCTCTTCTAAAAAAGAATACTGTCTTCCCCTCTCCTGCCTTGAACGCTGTGTGTGCATTGGGGCTCTAGGAAGTGCTAGCTAGAGTTCCCCACGCTTAAGTATGCACTCAGCACTAGCTCACTGGCACTCATTTCTCACTTGTAGATAGATTCCTGGACCCTTCTGTCTACTTTACCCCAACACTTGGTTTTTGCTTCCCCTTCATTTTGTGGCCCTGGGGCTGATGGGTGAAGAAAGAGCTGATGGTCACCCGAAAGCAGTCAGAGAGGAAGGGTCCCTACCATCGAGGACATAGATAGAATTGCCCTCTGCACTTTGACAATTTTGGAGGAGGGGCGTTTCTGGAAGTATCTTGGATGTTTTTAATGTACATAAATTATATATCCTACCCTGTGAGTGAGATTTTATTATCAAACCAGCCTGGCTCCTCTGCGCTGTCTTCTGGACTAGGCCTCAACCTTCATCCATGAAGACTTAAATAACCTTAATATAGTGTCTTGAAGGTCTAGGATGTATCTTCTGGGGATGACCCTAGCATCCATTAAAATGTCCATGAGAGTAAACTAGAAGCAGATAGTAAACTAGAAGCACTCATCTGTGGGTATAAGTGTAGTTATTGATCAACTAATGAAGATTGATCATCAAAAGAAGGAGAAGGTGGAGGAGGGAGGAAGACAGTAGGGGGGGAGAGGAGATGGATGGGGACTAGGAAGAAAGAAGATTGGCTGGAGTGGGAGGGCAGGAGAGGGTAGGGGGAAGTGAATAGAATCCAAATATCCACATGCATGCGTGGAAATGAAATCCATTGTGTATAATTAATATTATCTAGAATATCTGCCTCTTAATTTGCTTCTTTTAGGTATTTTGACATAACAACCAAAGTAACTCACCTGCCTGGGCACATAAAATATCATTGTTATTTTTCCTGCTGTCCTCTTTACATGTGCATTAGTCTTGTCAACTACTCTGAATGATGCTTTAACATTTGTACTTTATTTTGGTTTTTATGTTCTTATTGTATGAATTCTAGACTGGCTAGGTTTGACTAAAGCCCCAGTGTTAACATTTATGGATATTTGATAAAATGCCATAGAATAGGAAAAACGTCCTGGTCTCATGGATTATTTGGGGGTTTTATGCATTAGTGTGTGGAAAAACTCAGTGATACTCAGTATATTTTACTTCGTTTATTTTAAATGATCAGAAAGGATGGTTTCTGTACTGTTATTATAATAAAATGCAAATTCCTTAAAATTCTTTCAAATCATTAATGTATTCTCTAAGTGTCTGCCTTATTGCTGTTTGGTAATTTTTTTTTTCCTTTTTGGACCACTAACGTTGGTGTTATTAGTGAGCTTGCTGTATTGTCAGAAATCTAGTCTCCAGTTTTGAGCTACTGAATTAGAATATCTGATTTTAGGGCTTGGATGTAGCTTAGTTATAGATAACTGTAGTATCTATAAAGCACTAGGTCTAAACCTCCCTCCACCCCCAACCCTGGGGGGATGCAGGTAGTAATATTTCAAAAAGTCATAAAAGTATAATTCTAACCAGAATTTAAATTTTAATACTTCCAATCTATGGGAATATGCATTCTCATTTATGGGAAGTATACATGGTTTGAAAAGGACAAATGTCCTTCTCATCTGAAAGATAGCCATTTTGCATTAATATTCAATTGAAAAATATAAATACTTATGTTGATGCCTTTACATTTAGTATTTCGTAAAAGTATAGTATCTACTTCATCTTTACTCAGGGGCTAGGTAATACATTAGAAAATACCACTGTGTTAAAATGTCTCGGTGAATAGTTAGGATTGCTCAGCTTATGAGAAACTCTTTCTTGACTCACTTCATCCTGGCTCACATTAAGACCAGAGTCACTGACCATATGACCATTGTGCTATGTATTTTTATTTCAG
Seq C2 exon
GAACAGTTGACCTTCAGGGATGTGGCCATTGATTTTTCTGGAGAGGAATGGGAGTGTCTGGATTCTGAGCAGCAGAATTTGTATACAGATGTGATGTTGGAAAACTATAGGAACCTCGTTTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
-D3Ertd254e:NM_001101478:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: