MmuINT0048249 @ mm10
Intron Retention
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57067593-57067833:-
Coord C1 exon
chr17:57067789-57067833
Coord A exon
chr17:57067701-57067788
Coord C2 exon
chr17:57067593-57067700
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACACATGCATCCCTTCACAGGAT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCAAAGAGTGGCTTGAAGGGTATGCAGAACCTGCTCACGATTAAG
Seq A exon
GTAAGACCGCCCAAGGTGAATTCCTCATCCACAGATATTTCAGGGGAGTGGAGGTGGGACCCCAGCCCACACATGCATCCCTTCACAG
Seq C2 exon
GATGGAGACTCTGGCCTGCAGAGGGGGGGCTCCCTGAGAACCCCAAGCCTCACCAGCCGCTCTGATCGTCTGCAACAGCGCCTGCCTATTAGCCAGCACTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668:ENSMUST00000011623:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGTGGCTTGAAGGGT
R:
TGTCCAAAGTGCTGGCTAATAGG
Band lengths:
152-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types