MmuINT0049557 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75732849-75733202:-
Coord C1 exon
chr10:75733141-75733202
Coord A exon
chr10:75732907-75733140
Coord C2 exon
chr10:75732849-75732906
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTCTTTGTCCATTTTTTAGAGT
3' ss Score
8.98
Exon sequences
Seq C1 exon
GGCACAACAGGCCCAGACCCCACGACCGTCTACGTGGACATGCGGGCACTGCGCCATGACAG
Seq A exon
GTACTGTTCCCGCCCTGTCTGCATGGTTCTCCCATCCTCTGACTAAGGGCTACAAGCTGGGTTTGCCTAAACTGTATCTCCAGCATCCTGTGTGGTAATGGTGCTAGCCAGGGCAGGGGCACTTAGACCCAGGAAATGACATTGTGGGCTCACTTGAACACGTGTGGTTTGCCTCTTTAGAAATTACTACGGAGTAAATTTTATTCTGAACTTTTCTCTTTGTCCATTTTTTAG
Seq C2 exon
AGTTCGTCTGGTGGAACGGGGTTCTCCGCATAGTCTACCATTGATGGAGTCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: