MmuINT0050118 @ mm9
Intron Retention
Gene
ENSMUSG00000029754 | Dlx6
Description
distal-less homeobox 6 [Source:MGI Symbol;Acc:MGI:101927]
Coordinates
chr6:6817041-6817970:+
Coord C1 exon
chr6:6817041-6817329
Coord A exon
chr6:6817330-6817876
Coord C2 exon
chr6:6817877-6817970
Length
547 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
TTTTTTTTTTTTTTTTACAGACA
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTGAAGATATGGTTTCAGAATAAGCGCTCTAAGTTTAAGAAATTGCTGAAGCAGGGTAGTAACCCACACGAGAGTGACCCCCTCCCGGGTTCAGCAGCCCTGTCACCACGATCACCAGCCCTGCCTCCAGTGTGGGACGTTTCTGCCTCTGCCAAGGGCGTCAGTATGCCTCCCAACAGCTACATGCCGGGGTATTCACACTGGTATTCCTCACCACACCAGGACACCATGCAGAGACCACAGATGATGTGACTTCTCTGAGTGAACGCCTACGGAGCTTCTGAAGGAG
Seq A exon
GCAAGGAGGATCCAGGACTCTGTTGTATCTGCCAAACAGCCTAAGCATTGAGCTCAGAGCAACTGCCCTGTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCTCCCTCCCTCCCCCTCTCATCTCCTCTCCTTCCTTTCTCTTTTCCTCCCTTTCTTTCCTTGTTTTTCATCCCTTTTACTCGCTCTTCTTTATTTCTTGCCTATCTTTCCATCCTTGCTTTCTTCCCCTTCCCTCCTCTTCTGCAATTTACTGTCTTTAGTAACCTTAATAAGTAACTTTGTAATAAACACACACACACATACACACACACACACACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTTTTGTGCCAGTGTTCTGGAAACCCATCACTGTAAGGATATTTTCCTTCACAGTCTGGGATTCAGGCCCCGAGCCTCCTCTTTAGTACTCTCTATCCAAATGACTTTTTTTTTTTTTTTTTTTACAG
Seq C2 exon
ACATTCTCCACCGGCAGAAGAATCTGCACAAACATGGCAGCATTTTTACTTGTTTAATGAGTTTAAGACATTACATGATAAAAAACAAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029754-Dlx6:NM_010057:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.554 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(22.8=15.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATATGGTTTCAGAATAAGCGC
R:
AACAAGTAAAAATGCTGCCATGT
Band lengths:
342-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: