MmuINT0050142 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138217714-138221024:+
Coord C1 exon
chr7:138217714-138218037
Coord A exon
chr7:138218038-138220997
Coord C2 exon
chr7:138220998-138221024
Length
2960 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTTTTATTTCTTTGACAGCTT
3' ss Score
8.78
Exon sequences
Seq C1 exon
GAACAGAAAACAGTTTGGCCGTGAGGCTGGAGAATGGAGGAGACAGGTGTCAGGGTCGTGTGGAGATCCTTTACCAGGGTTCCTGGGGCACTGTGTGTGACGACAGCTGGGACCTCAATGATGCCAATGTGGTGTGCAGGCAGCTGGGCTGTGGCTTGGCCGTGTCTGCCCCAGGAAGTGCCAGGTTTGGACAGGGCACAGGGCCCATTGTCATGGATGACGTGGCCTGTGGAGGCTATGAGGACTATCTTTGGAGATGTTCCCACCGAGGCTGGCTCTCTCATAACTGTGGACACCATGAGGATGCTGGAGTCATCTGTTCAG
Seq A exon
GTAAGACCCAGTAATCATTACATCTGCTTGGCTGCAATGAGCTTAGGTCACTATGAATGCTGTCAGAACTCCATCCTGGCCTCTTCATTGGTCCTTGTAAGGTTTGGTGAATATCCCGGACAATGCCCTTCTCAGTCATGGTCCTGCCCAAGGCTCTCAGTCTCTAGTGAGGCTTGAGTTTATGGGAGAGAGGGAAGCCATGGAAATGCAGTGTCAAGTCCCACACTTGAGAAAGGACCAGGGTCTGCATACATGTGCTCTTGCAAGAAGTAAACCAGCCTTGGTTTGGAGTATTGGAATCCTGTTTCTATGTTGAATTTGGACTATCAGAAGGGCAAAGCTGTATGGCATAGCACACTGAGCAAATTCACTGTTTTTTTTCCACATTGTTCCCCATCTCAGAAAGTCCTGCAGAAGGACTCTTCTGGGCAAGCTTCAGTAACTCCTTCAGTCCCTCAGGCTCTGCAGAGTTCTGGGTTTTCACAGATCGGGTTCAATAGCTCAATGGTGATAAAACAGTGGGAATGTTACTCATGAATGGAGATCCTATGTAGTATGTTCATGAGATAAATGGACAAGAAATATTTGTGCCTGGAGAAATTTAGAGTCCTACAGAATACTTTAACCATGACGGTGGATCTTTGATTCTTGAAGAAGTCAAGCCTGAGTGTGCTTTAGGCCCAATACCCACACAGTAACATAGAACCCTGGTTTCCTGTCATGTATCCAGGCTCTCACAATTTTCTTACTTGCTATTAGTAAACTGCCTCAAACCAGGTCCCACCTGGGGCACGGAGTACATGGTAGAAATTCATGAGTAACTGCAATATTCATGGTCTGCTCTGGCAGCACCAGCCCTGGAACATCAGCCTCAGCTGCATCTGTAGAAACGCTGAGTCTGTCTTCCCTGGATGTCCAGGTGAACTCCTAGGGACTTTCTGTCCACTGTCCTTCTATTTCTCACAGATGTCTGTGCCTCCCCCAGCTCAGGTCAATGTCAACAGCTTGGAGTCCCCTCTTCTACTATTCATTGTATAGTCATGCTTTTTATTCTGACACGAGGGAATTATCGATAAGACACACACTCCTCACCCCTCTGAGTTTTCACCAAATTCATACGCTGGGTCATGGACTTTCCTCTTTGCACATTCATGGCTGACACGACTTGTCTGGTATGTTTTATGCTCACAGCACTGGGCATCATAGACCCCACTGCTGCATGCTAGTCAAAATGGATGGCCTGAGGCTTGCATGGTGCTAACCCCAAGTGGGCAGGCTGGCACCTCAGAGTGCCACACTGTCACCTGGTGCTCTTTGTGTATCTTCCTCTGCATCGAGACATCTGAATGTTTTTAGTTCCTCCATGTTTTTTCCTGTTTTCTACATTGATTATCTTACTGATATATAAGTGTACATGTATACATGTAAGTATATGTTTATGTATAACATAAACCAGGCTGCTCACTTTGACCTAGTCTCTCCAGCTTCATTTCCAAATGCTGGGATTTCTACTCAAATCCTCAGTGTCCAGCATACACTCTGGTTACAGTTCTTCTCCTTATTTTACAGGATACTGCAGTTCACTCAGGCTACAATACTTTGCTTGCCACATTCCCCATTCCAATAGCGCCCTCTGTAGACACAGTCTGCTAACTGCAGATGGTATAATGTCCTGGAGCAGGTCTACTTTGTCCTGGTTTAACCAGCCACCATTTGGTTTGTTCTAATTGTTCTCTAAAGATCAAGGACACTGTGCCTTTTAGAGGTCCCTCCCTGATTTACACCTTTTAAAACATACAAACACATGCACACACTTACACATAAACACACACACACATTGACACTCAGACATTAACACATATAATCCGTATATACGTACATATACATTTGCATGGACAGACACACAAACATACATAGAGTTACATACATGGACCAAAAACCATAGTCATATATATCTCACATGCATATATGTACATCATAGACAGATACAACACAGATACACATTGTTATACACGCTCTCCACACACAGAGACACACACAATCCCAGAAGTTCACACAGAGACAGATGTGGACACTGACACACAGACACACACATGTACATTCTATGTCATTGAGTGTCCATGTATATTCTCCCACAACACCTCCAGTAGCACTTGTCCCTTGTTCAAAGCTCTCTGTTGATGCCTTCAGGAGTCTAGGTATGCTGAACTCTCTACAGGGCTGGGAGCACACATTGCTCCTTTTGTTCCTAGCTTGGGACATGTACCAAGAGCCTAACAGGGTGCCTGTCTCAGGAGAGTGTACTGCAGCTCACAGGATGGAGGATGGAACTGTGAGCATCCACCCTCATGGCTCCTGAGAGCCTTCCTGCTGATTTCACAGATTATGCATATACATCAAGACATATTCACACACACATGCTACACCAGCAACATTAACCACACCTCGCCATCCCTGAGAGATCATCTCTTAGTTTCCAAAGGAAATGGGTTGCAGGAACTTCTTTGCTTCTACCCAAAGAATCTGACACTCAAGTCTTCATCAGTTGGTGTGTGACCCATAGACACCTTCCTGTGTCCTTCCAGTCATCCCAGATCTAGTCCCTCATCGATTATCAGCCTTGTGTGACTCAGTGGTATATCACATTGCTCACGTGAGGACGGCAGAGGGAAAGATTTTCATGCTCAGTAATACAGAGTCAGGCTGTTTTCCTTCATCGTTTTGATTCACCCCCTGTGTGATTGGTTTAGACGCCCATGATACAAAGGACCTGGACTAGAATATTTCTAAGACTATCTTGCTCTTTTGACCAATCAAAAAGGAACCTAGAAAGTTGAGTTTGGTCTTTGGGGTGGGGCCCACATAGGAGAGTTGTAAAAGCTACCACTTCAGAAAGGATTTTTGCCAGGATTCTTGTGGATGAAATGCACACTCTGAATTTGTTTTTATTTCTTTGACAG
Seq C2 exon
CTTCTCAATCAAGCAGTCCCACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: