MmuINT0050856 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69265909-69266480:-
Coord C1 exon
chr11:69266320-69266480
Coord A exon
chr11:69266049-69266319
Coord C2 exon
chr11:69265909-69266048
Length
271 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
ACAGTGTGGTTTCTGAACAGATC
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAG
Seq A exon
GTGAAGTTCCTTCAGTTCTGAGTTGGTTCTTTGGTTTTCCTAGCTAACCACCAGCACCCCACAGATTCCACATCTGTTTCTGTAGCATCCCCAGCCTCCCAGATCAGTCCCTGTGGGCTGAAGCCTGTTTCTCATCAGTCATCCCCTGAGAGGCCTCACTGGGCGGGCGGGGTTGCTTTAACTCCCACTCCAGTCTGCCAGCCTAACCTGCTTTCCCGCTGAGACTGTGGTGAGAACTTCAGTCCTCTGATACAGTGTGGTTTCTGAACAG
Seq C2 exon
ATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:55
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.6=100)
A:
NA
C2:
PF127802=AAA_8=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCGCTTGTATCGACAGG
R:
GGGTCTCCCACGGGACTTAG
Band lengths:
292-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: