MmuINT0051020 @ mm9
Intron Retention
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73020481-73023494:-
Coord C1 exon
chr6:73023369-73023494
Coord A exon
chr6:73020646-73023368
Coord C2 exon
chr6:73020481-73020645
Length
2723 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGA
5' ss Score
2.89
3' ss Seq
ATTTTTTCCATTTTTTTAAGCTC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GCCAATCGATGGATAAGAAACAAGGAAAGCAAGAGTGGGTTAAAGGTCATTAAGCTTACAGACACCAATTTCTTACGAATACTGGAAAATTCCATCCGACTGGGTTTACCTGTCTTACTGGAAGAG
Seq A exon
GTTCGATTTTTACTTTGCCATTTCATGTTAATCCCGAACTGTCAGATGGCTGGAATGCTGTACAGGTCACTAGACCACACCTGCACATGTGAAGGACACCATTCAAGTCCATATTCAAATGGGTCAAAACAGTGGCTACCTGAGTGGTAAACTCTCAGATGAGCTGGGACCTGTTGGCTGAAAGAATTTTTCACCCCACTGTTTTGGAGCTAAGAGTCTTTACTTACCATGCTCCTCATTCCCAAGCCTCGCTGCGGGCCTTAAAGGACGAGAAATTCAAAGCAGTAATGATAGCAGGAACCCCTGTCTACACACGTGTCATATACGAATAATGAAACACGAACTATTCTGGTAGACGTACTCATTATTTCTACTTGGGCATATGGTCAGATTAAAGAGATCAATATTAAAAATGAACCTTTTTTTTAGACAAGTCTCGTATATACAGTCTCAAACTTACTATGTAGCCCAAAGTTACCTCGAACTCTTGATCCACCTCCCTCTACCTCCTAAATTCTGGGATTACAGATATGTGTCACCAAAGCTGGGTTTTACAGTGCTAGTACTAGGACTTGGGTCTTTAGGCATGCTGGGCAAACACTCTGCCATCTGAGCTCCCCTCACATACCCCAGAGGAGTGGCTTATTGAGATAAGATGTTCTACCGTGAGACTTATCACTCAAAGACTAATGTTGCTTACATCGTTCACTCATCCCACAAACATGTAAGAACAAACTTCAAAGAGTATAGATAAGCAAAAGCACACAAACTCACTGGGAACAAAGACTGTAAACAAGTAAACAAAGGAAGGAAGGAAGTGATGGAGAGGAAGAGATCTTTCAAGCAAAAGCTTTGAAAGAATAAGCAGGGTACAGAGACAGCCAATAGGAAGGGCAGGGACACAGTACTGGTCAAGTTACATCCTCTGGCTAGAATAAGACACTACCACAAAAAGCAACCTGGGGAGGAAAGGATTTGTTTGACTTACATTTCCAAGTCACAGTCCATCACTGAGGAGGGTCAGGTAGCAACAAGAACGCTGCTTCACCAACTCCTACTTAGTTTTGTTAGAACAGCCCAGCATCACCCACCCAGGGGTGGCTGGGCCCCTCCCACATGCTCACAGGCCCCTTTGATCTAGCAAGCCCTCAGCTGAGGCTCCTCCTTCTCAGATGATTCTAGGTTTTCTCAAGTTAACAATAAAAACTAACCAGCATAGATCCTGGAGAGTGTGAAATTTAAGCTGTGATTTCTGTCTTAGCTCAACCAAGCAAGAAGGTCTCTTGAGCCAGGGGACATGGGCACCATGAATGTTGCCAATGAGCACACTTGCCTTCTCTAATTTGCCATTCTATTTTTATAAGAGAATAAGGAATAAATAAAAGCATGAGGTGTGACCATCTAAATCCTATGTAGAAGTATCTCTGATTCATCACGAAGCATGCTCAGAAATAGCACTGACCTGTGGTAACTCTGCTGCAGCCCTTTCATGGTAACAAGGACCAATAATTAATATGATGTCATCCCAAACATTTGTAGAAACCAAACAATCACGATTTGGTTCTCAGTGTCCTAACTCATTAATCTTCACTTCAACCTTACTGTTAGATGGATTGATTACTCATAGATAGCTACTATTATTATCCCATTCTTCCAGTGAAGAAACTGAGACATCAAGAAGTTGAACTATCTGCGCAGTCTTGACTGCTTAGAAAATCCAAAATGAGTTACAATCCTCCCCACTCAAGCTACCTTGCGCACCAGGGTCTCACTGCAGCCAAGCTTTGGCCAGCACAGAGAAGGTTCTAGAAGGATTCCCCAGACCCTGCTTTATGTCATGTCACAGAGGGAAATCTCCGGAAGACTTTGGCACAGTTATGTTAGCTTCAACTGTGCTCTCAACCTGTGTTTACTTTGAGACACGAGAGGTCCCAGGGACCTTCCTCTTTCACAGCAGAGGGCAAAGTTCCTTCTATAGAGTTGTGGCCCCGTGCAAGAGCAGAAGACTCTTGGAAGTCAGGCCTCCAGCCAGGGACAGAATGCTGCAGCTGGGCCTTCCCTGCTCTCCAGGGTGTGAAGTCATTATTGTGGTGCTCATTCTTAGATCCTCTGTGCATTTGCTACAGGGGTTCTGTCAGACCCTTTTCCTACCCACTTATGACTGTAAAAAACCATCTTGTCTGCTCAGCGCTTCATGTGGAGGCCAGGGAGGAGGTAGTCCACAGGTTGTAGATGCACGAAGAGGTCAGAAGTTGACTTCGGATGTCTTCCTCTTTCGATCCACACCTTGTTTTAGGAAACGGGGTCTCTCGCTGAACCGGGAGCTCCTCAATTAAGTGTACAGTCTTAAAAAAGCTCAAGGCAGACTATCAACTTGGCTACAAGGACAAGCAGAAGTTCAGTCTTTTTGAGATCAAGAGGTACCTTCAGAACAATGACTTGGCACACAGACTTACTTGTCTGCAGACAGCCGAGGAGGGGGTCACCCAGCAGTCAGGTTCCATAGCAACCTTTGCTCTGCTAGCTTAGTTCTCGTAGGGACGTGAGATCATCCTAAACAAACACCCTGCCTTCCCGTTAGGAAACACATGATCACGGAGGAAAGTACATACTCAGAGTAAATTCAGAGCCCCTAGATAACAAGTTGGTGGCAGTCATTTTCAACTCCTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTTTTCCATTTTTTTAAG
Seq C2 exon
CTCAGAGAAGTCTTGGATCCAGCCCTGGAACCCATCCTTTTAAAGCAGACGTTCATGAGTGGCGGAAGACTGCTCATCCACCTCGGAGATTCGGACATCGATTATGACAAGAGTTTCAGGTTTTACATGACATCCAAAATGCCGAATCCTCACTACCTACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-Dnahc6:NM_001164669:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.7=100)
A:
NA
C2:
PF127812=AAA_9=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: