MmuINT0057433 @ mm9
Intron Retention
Gene
ENSMUSG00000026814 | Eng
Description
endoglin [Source:MGI Symbol;Acc:MGI:95392]
Coordinates
chr2:32534411-32535855:+
Coord C1 exon
chr2:32534411-32534662
Coord A exon
chr2:32534663-32535800
Coord C2 exon
chr2:32535801-32535855
Length
1138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCAGACTCCTCCCTCCTCAGGAA
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTGAGCGTGTCTCCATTGACCTCTGAGGTCACAGTCCAGCTAGATAGCTGCCATCTGGACTTGGGGCCCGAAGGGGACATGGTGGAACTCATCCAGAGCCGAACAGCCAAGGGCAGCTGTGTGACCTTGCTGTCTCCAAGCCCTGAAGGTGACCCACGCTTCAGCTTCCTCCTCCGGGTCTACATGGTGCCCACACCCACCGCTGGCACCCTCAGTTGCAACTTAGCTCTGCGCCCTAGCACCTTGTCCCAG
Seq A exon
GTGAGTGGACATGGCTTGAGACTAGTTTCACTGAAGCTGTGATGTCAGTATATACACACACCTGCAACTATCCACCTACACGTTTATCCTCTACATATTTTAACATCCATCCATCACCCATCTGCCCACATATCAGGATCCCAACCATTTATCCACATACCCATCAATCTACCTACCTATTCATGGACTCCACCTACGCACCCACCAGAAGCCTAGCCATTCATTCATAGACCTACCCACATACCCAGCTATTTACTCACCCACCCAAACAACCCACATACCCAACCATCCACCTACCCACACACACAGCATTTACTGCCTGTCAATCCATGTACCTATCCACCCATCCATCATCTATCCACCAATCTACCTACCTATCCACACGCACACTCCTGCATCCACCTACCTCCCCTCTCCCTACCAGCCGCTCACCCATCACCCACCACTTGCCCTTCTATCTACTCATCCACAAGCATCCATTATTCTCAATACTTTCACTAGCTCACCTAGTTACTCACTTACTCTAGAATCCCACCCACCCACTAACCACCCACCTACCCACCCACATGGCGATCACCAATGTGACTGATCTCAGGAAACTTGACACTCTGCCCTGCTGGTATCACACGTTGCCCTCAGTCCTGACACACTCACAAGAACACTCCAGGTGTCTGCACACAGATTTCTTTCTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATATCAAAAGTCCCCCATACTCACCCACCCCCATGCACACAGATTTCTAGGACTCAAAACCTCCTGAAGCTGGGCCCCCACACAGACAGCTATACCTGTCTTCCAGGCCCTGAGCCTCCAAGCATCTGGGCTGACCTGGCTTGTGGCTCACGGCTTGCACAGGCTAACAGATGCTGGGCTCCTACTGGAGACCATTTACAGTAGCCGCAGGCTACCCTGCTGCTCTCGCACACCATGTGCCTCCCTAGGATTTGCCTGCAGCCTCCCAGCCTGAAAATAGCGGACAAATGACTCAGCCAAGGGCTGGGATGGCAGCAAGGGAGAGCTGCAGACAGGGAGAACCGCATGCTGCCAGCTGAAGGCTGGGTCACTTACCAGACTCCTCCCTCCTCAG
Seq C2 exon
GAAGTCTACAAGACAGTCTCCATGCGCCTGAACATCGTCAGCCCTGACCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026814-Eng:NM_001146348:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(62.4=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(3.0=21.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCTCCATTGACCTCTG
R:
CAGACAGGTCAGGGCTGA
Band lengths:
303-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: