MmuINT0060133 @ mm9
Intron Retention
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91475935-91476571:-
Coord C1 exon
chr2:91476475-91476571
Coord A exon
chr2:91476099-91476474
Coord C2 exon
chr2:91475935-91476098
Length
376 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GCCCCTGCCCCCTGCTGCAGTGT
3' ss Score
7.67
Exon sequences
Seq C1 exon
CCCAGGAGCTGACACACTATGTCGCACGTCCGCGGCCTGGGCCTCCCTGGCTGCTTGGCTCTGGCTGCCCTGGTTAGCCTGGTACACAGCCAGCATG
Seq A exon
GTAAGGGGCACTTGGAGGCCTCGGGCAGGATAGAGGATGTGGGAAAGGCCTGAGGGATGGGGTTTCCTGCCTAAGAACACAGAATACAGGGACAGTCCCCAGGTGGTCCTCAGACCAGAGTGTCCAGCTTTGAGAAGGAGTCATGTGTGTGGTGCAGGTAGGAGGGCATCAGTTCTGTCTTCTAGAACGGGGGAGTGGGCTAGGGCAACCAATGAAAGGCAGATGACTCAAACTATGTTCAGTGGCTTTCTGGGTGCTTTCCCCATCCCCTATGTTCCCCCTTGGAAGCTAGCAGGGCAGCCAGCTTCCTACCCCTAATGGTTAAGCTAGCCAGGCTTCCTGAGGCGACTTCCCATGCCCCTGCCCCCTGCTGCAG
Seq C2 exon
TGTTCCTGGCGCCTCAGCAAGCACTATCGCTGCTCCAGCGGGTCCGCAGAGCCAACAGTGGCTTCCTGGAGGAGCTCCGAAAGGGCAACCTAGAGCGTGAGTGCGTGGAAGAGCAGTGCAGCTATGAGGAGGCCTTTGAGGCCCTGGAGTCTCCCCAAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-F2:NM_010168:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0059415=Gla=PU(76.2=58.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGAGCTGACACACTATG
R:
CTTGGGGAGACTCCAGGGC
Band lengths:
256-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: