MmuINT0061078 @ mm10
Intron Retention
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25220453-25220928:+
Coord C1 exon
chr2:25220453-25220712
Coord A exon
chr2:25220713-25220801
Coord C2 exon
chr2:25220802-25220928
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTGCACTTCCTTGTCCCAGCTA
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTCTGAAACCCTACAAGAATTTTGAGATCCTAGGCCAGCTCCCACGCCAGGATGTGGACACCCAGGGGCCGCCACAAGTAGAGAACAGACAGGGACCACTGACTGCAGGCTTCATGCCTTATCCACCCTACCCGGCATGCCCCCCAGGCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGGATGCAGCACCTCTTCAGGATACCCCAGGGAAGAACAACCAG
Seq A exon
GTAACTGGATACACTTTGGCCTGAGGCTCCTTTCACTGGCCTCCCCATGTGGAAGCTGAGTAGTGGTAATTTGCACTTCCTTGTCCCAG
Seq C2 exon
CTATACCACTGCAGGAGGGATGAGTACCTGCCTCCACACCCCCCACAGGAGACACTAGATGTAGGCAGATTCCAACGACTGCCCCAGCTAGACCACCCCAACCTAATCCAACGCAAGGCCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969:ENSMUST00000028346:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.628
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGATGCAGCACCTCTTC
R:
ATGGCCTTGCGTTGGATTAGG
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types