MmuINT0062960 @ mm9
Intron Retention
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58207579-58208314:-
Coord C1 exon
chr18:58208189-58208314
Coord A exon
chr18:58207705-58208188
Coord C2 exon
chr18:58207579-58207704
Length
484 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TTCTTCTTTTTCTGTTTTAGATC
3' ss Score
13.86
Exon sequences
Seq C1 exon
ACATCGATGAGTGTAGCAACGGCGACAATCTATGCCAACGAAACGCGGACTGTATCAACAGCCCCGGCAGCTACCGCTGCGAGTGTGCGGCCGGCTTCAAACTCTCCCCCAACGGGGCCTGTGTAG
Seq A exon
GTAAGCAAGAGGCAGGCGGTCACCAACCACAGCACACCGTGAGGTCCCCTGCTCTTGAAGGGCTCCCTTGCTTCCCCTCCACAGCATCCTCTCAGGATGACTTTAGAAGGACTGTCTAATTCTATCTCTCTGTCATGCTGAAAGGCTCCCACCGTAACTTTCAGATTAGTTTGTTGAGGAAAGAGGTTGCTTCGGTGGATTTCTCTGGTAGAAAATAGAATCTTTGAGGTCCCAGTCAACCTACAAAACTTGCATGACTGGAGGGGGGGGCACTGGGTTCTTGAAAGGCTTGCTTATTTTCAGTCAGCTATTGTTCTGGTTCATTCTCAGCCTGTCTATAATAATTAATAGCAGGTTAGAGAAATGCTCTGTGCAAAACAAAGGAATCTTAATAAAACTCAGATATATGTATAACATGTGTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGTTCTTTTTTTTTTCTTCTTTTTCTGTTTTAG
Seq C2 exon
ATCGCAATGAATGCTTGGAAATTCCTAATGTTTGCAGTCATGGGTTGTGTGTTGATCTGCAAGGGAGTTACCAGTGTATCTGCAACAATGGCTTTAAGGCTTCTCAAGACCAGACCATGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-Fbn2:NM_010181:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(42.9=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF062476=Plasmod_Pvs28=PD(20.4=46.5),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGATGAGTGTAGCAACGGC
R:
TGCACATGGTCTGGTCTTGAG
Band lengths:
247-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: