MmuINT0063687 @ mm9
Intron Retention
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:52357784-52358643:-
Coord C1 exon
chr7:52358373-52358643
Coord A exon
chr7:52358042-52358372
Coord C2 exon
chr7:52357784-52358041
Length
331 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCTCCTGTTTGCTCTGCAGAGA
3' ss Score
10.63
Exon sequences
Seq C1 exon
CTCTGTAATTAATTAACTAAAGTGGATCAAATGAGAAGGTGAAAGTTCACAGAGGAACACTCCTGTCTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGCGTCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTCCCTTCCACTCCGGGTCACCCTGTCGGAATGGGGATGCCACTGCCCTGGGCCCTCAGCCTCTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAG
Seq A exon
GTAAGAGGCCACCAGGACCTGGAGTGTGTCAGGAAGGGGACAGGAAGAAGAGCCAAAGAGTGGAAGAGGGACAATAAGTCCACTTTTTCCATGATGTCCTAGCCTTCATGGAAATCTCACTGTGGGTAACTTCTCTGTGCATCTGAGTCAAATACACTTGACAATCTCAGGCTCGTCTCTGTGTCCGTCTGTCCGTCTTGCTTCCTTTCTGGGTGTCTGTCCCCTTCTCTCTGGAGGATCATGGCACTTCAGATCGGGTCCAGTTTTCATTCTGCACCTCTGTGGGGCACGGTGCAGTCCGTGACCCGAGACTCTCCTGTTTGCTCTGCAG
Seq C2 exon
AGACCCGCCCCCCACTGATGTATCATCTCACGGCTGTGTCAAACCCATCTACGGGGCTTCCCTCTTTCTGGGCTACAGGCTGGTTGGGTCCTCAGCAGTATCTGACCTACAACAGCCTGCGGCAGGAAGCTGACCCCTGTGGGGCCTGGATGTGGGAAAATCAGGTGTCTTGGTATTGGGAGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTTGGAGGCCCTCAAGACCCTGGAGAAGATATTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-Fcgrt:NM_010189:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012913=MHC_I=PU(48.9=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAGGGACCTTGTGAAGA
R:
GTCTGTGGTCTCCTTCTCCCA
Band lengths:
346-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: