MmuINT0064479 @ mm9
Intron Retention
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107861575-107861857:-
Coord C1 exon
chr8:107861752-107861857
Coord A exon
chr8:107861670-107861751
Coord C2 exon
chr8:107861575-107861669
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TTCCCATTTTCTGTCTCTAGCCC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAAGACAAGGACCTGGTGCCCGAATTCGTGCACTCGGAGGGTCTGAGTTGCCTGATCCGCGTGGGTGCTGCTGCAGACCACAACTACCAGAGCTACATCCTTCGAG
Seq A exon
GTCAGCACCATACTTTCCCCCTTGGTCTTCGGTCCCATGCCTCCCCTCCCCGCCCTGACCTCTTCCCATTTTCTGTCTCTAG
Seq C2 exon
CCCTGGGCCAGCTGATGCTGTTTGTGGATGGGATGCTGGGGGTGGTGGCCCACAGCGAGACCGTGCAGTGGCTGTATACCCTGTGTGCTAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-Fhod1:NM_177699:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCGTGCACTCGGAGGG
R:
GCACACAGGGTATACAGCCAC
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: