MmuINT0066464 @ mm10
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31604614-31605343:+
Coord C1 exon
chr2:31604614-31604716
Coord A exon
chr2:31604717-31605242
Coord C2 exon
chr2:31605243-31605343
Length
526 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGTCTCATCTGATTCCACAGATG
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTGTCTGTGCCTAGGTTTGTTGTTGGGATTGTCATAGGAAGGAACGGAGAAATGATTAAGAAGATCCAGAACGACGCTGGTGTGAGGATCCAATTCAAACCAG
Seq A exon
GTTGGTCTAGTGTGGACCTAGACAATGGGCTGGGTTAACCATGGGTACATTTTCTCTTTCTTTTTCTCTTTGGCAATCTCTTGTTTGCTCCCTGTGTCTTTCCTTGGTTGTATACTAACTTGATCTTCTTTTTGGCCTGTGGTTTCTAGCTCCCTTCCCCCAAGAAATGAAGATTTTATTTAGTATGGCATTTTCAGTTTGTAATTTTGCTAAGTAAGGATTTCTTTACAAAATATCCCTTTTAGGTTTTATTTAATAAGACAACTTACTATCACAAAGAAAAGCTAACATCTTTCATGGTAGGCAAAGATCTGAGTGTTGCTTAGCTGGCCTTGAGCTCGGTGTTGTCGTACCTCAGCCTCCCAAGTGCTGGGTCATGTGTACACGACAGTGATTGGGTGTCATCCTGGAGTGTGTGAAAACACACTCATTCACAGTCCCCATCCATCACACTCGGAGTGTAGACTGTGAAACTCTATTCTTTGCCCTTGGACTTGTCTTTACCCTGTCTCATCTGATTCCACAG
Seq C2 exon
ATGACGGGATTAGTCCAGAAAGAGCAGCGCAGGTCATGGGCCCTCCAGATCGGTGTCAGCATGCAGCTCGCATCATCAATGAGCTCATTCTCACGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843:ENSMUST00000113482:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(54.0=100)
A:
NA
C2:
PF0001324=KH_1=PD(39.7=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTAGGTTTGTTGTTGGGA
R:
CTGTGCCGTGAGAATGAGCTC
Band lengths:
198-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types