MmuINT0068493 @ mm9

Intron Retention

Gene

ENSMUSG00000029275 | Gfi1

Description

growth factor independent 1 [Source:MGI Symbol;Acc:MGI:103170]

Coordinates

chr5:108149129-108150276:-

Coord C1 exon

chr5:108150139-108150276

Coord A exon

chr5:108149295-108150138

Coord C2 exon

chr5:108149129-108149294

Length

844 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

3' ss Seq

TCTTCCTCTCTGCTCTGCAGGAA

3' ss Score

10.98

Exon sequences

Seq C1 exon

GTGTTCTCCACACCGCACGGGCTGGAGGTGCACGTGCGCCGGTCCCACAGCGGCACAAGACCCTTTGCGTGCGAGATGTGCGGCAAGACCTTCGGGCACGCGGTGAGCCTGGAGCAACACAAGGCAGTGCACTCCCAG

Seq A exon

GTAAGATCGGCGCTGGCGGCCTGACGCTGCACTGGGGACCTTTCAGCTTGTCCTCCGAATCGGCACCAGCCATTTTCCCACTGCCTCCCGGTGCCCCCTCTGCTTGCTCCTATTTGGGGGTGCAGAGAAACCTGGGTGACAGAAGTCCTGGAGTGTGCTGCAATCTTAGATTGCAGTGTCGCACCGCTGTGAGTCTCCAGCAGTGGAATTCTGTTGGAGATTTGTTGACATTTGCTGCTAATGCACTGACTTTACTGTTTATGTTCCCTTCATCCTTCCTGACTGGCAAGGGAGGGTCTCAGTTCATGCGCAGCGTCCAGTAGCGAATGCTGGTCATTCATTCATTCATTCATTCATTGCTTTATAACTTGCCTAAATCTAAGGCTTTAGGCACCTGAGAATCCTGTAGCACAGCAGGTCCTGTATGGTGGATTAAAGAGAGGGAGATAAGCAAAATACTACACAAGTGTCTGTGACAGCAGCCCATCTGGTCCAAACCCCACAGTGACTGGGGAGGAGGGGCAATCTAAGTGGCTGAGGTCCTGCTGAGGAGGGTGTCAATGGGTGTCAAAAATGCAGGGCGGAGCTACGCTTTTGTCCTGGGGTGTGGAGGGTTGTGGCTGTAAAGTGTTTTAGTAGTTAATCAGTAGGTGTTGAATGATGGGGTGGAGGGAGAGAGGAGAGGGTTTCTGGCTCTGGGAGATCAGTAGATGTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAGCGCCAAGGAGGCTGCTGAAGGAGCGGCACATTTCTTCCTCCTCTCTTCCTCTCTGCTCTGCAG

Seq C2 exon

GAACGCAGCTTTGACTGTAAGATCTGTGGCAAGAGCTTCAAGAGGTCATCCACGCTGTCCACACATCTGCTCATTCACTCGGACACCCGGCCCTATCCCTGTCAGTACTGTGGCAAAAGATTCCACCAGAAGTCAGATATGAAGAAACACACCTTCATCCACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029275-Gfi1:NM_010278:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

NonCoding

No structure available

Features

Disorder rate (Iupred):

C1=NA A=NA C2=NA

Domain overlap (PFAM):

C1:

PF138941=zf-C2H2_4=WD(100=95.2),PF0013017=C1_1=PU(10.9=28.6)

A:

NA

C2:

PF0013017=C1_1=PD(85.5=83.9),PF0009621=zf-C2H2=WD(100=41.1),PF102764=zf-CHCC=WD(100=39.3),PF134651=zf-H2C2_2=PU(38.5=17.9),PF0013017=C1_1=PU(11.5=10.7)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000135039